Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq2333 161 2e-34 seq2351 134 2e-26 >seq2333 Length=8475 Score = 161 bits (178), Expect = 2e-34 Identities = 732/1144 (64%), Gaps = 26/1144 (2%) Strand=Plus/Minus Query 187375 CGATGCATTCCAGACGTTTGAATATCAAGTCAATACGATGCAGACTTCAAACGGTCAGAC 187434 ||| || |||||| || | |||||| |||| |||||| |||| || | || |||||||| Sbjct 5165 CGACGCCTTCCAGTCGCTGGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGAC 5106 Query 187435 ACCATTCACGACAATCAACTTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTCAAAA 187494 ||| || || | ||||| | || || |||||| || ||||| | Sbjct 5105 ACCGTTTGTCACCTTTGGTTTCGGTCTCGGCACCCGTTGGGAATCGCGCCTGATTCAGCA 5046 Query 187495 AAGTATTCTTCAGAATCGTATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATTTTCCC 187554 | || || | || || ||||| ||||| || || | ||||| || | ||||| Sbjct 5045 ATCCATCCTGCGCAACCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCC 4986 Query 187555 TAAGCTTGTTTTCACATTGAGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGCTACGC 187614 || || || ||| | | | ||||| || || | || | | ||| ||| ||| | Sbjct 4985 CAAACTGGTGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGA 4926 Query 187615 CATCAAAAAGTTAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTTGAACTA 187674 |||||| | | || || || || || || ||||| |||||||| || ||| | || || Sbjct 4925 CATCAAGCAACTGGCACTGGATTGCGCCAGCAAGCGGATGTACCCGGATATTCTCAATTA 4866 Query 187675 TGACAAACTAGTTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGCTCATTCTT 187734 || | | ||| | || || ||||||| | || |||||||| ||| ||| | Sbjct 4865 CGATCAGGTGGTTAAGGTTACCGGCTCGTTTAAGACGCCTATGGGCTGCCGCAGTTTCCT 4806 Query 187735 GGGTGACTGGAAGAACGAAGATGGTGAAACGGTATTCGATGGTCGTAATAACTTAGGCGT 187794 || | || | || ||||| || | | | ||||||||| || ||| | || || Sbjct 4805 TGGCG--TGTATGAG-GAAGAGGGCAAGCAGATCCACGATGGTCGCAACAACCTCGGGGT 4749 Query 187795 CGTCTCAATCAATATCCCGCGTATTGCTATTGAAGCATCGGGTGATACTGAA---CGCTT 187851 || |||| | ||||| || || | |||||| | ||| ||| || || Sbjct 4748 AATCAGCCTCAACCTGCCGCGCATCGCGCTGGAAGCA---GAACATAACGAAGAGCGTTT 4692 Query 187852 CTTCGAGATCTTACACGAGCGT-TGTACACTAGCTTACGAAGCATTGATGTTGCGTATTA 187910 || | | || | | ||| || | ||| || | |||| |||||| ||| || Sbjct 4691 CTGGAACCTGTTGGATAATCGTCTGCA-ACTGGCGAAAAAAGCGTTGATGACGCGCATCG 4633 Query 187911 AGCGTTTTGATGATGTAACTGCATCAGTTGCTCCGATTCTATACTGTGAAGGTGCAATGG 187970 ||||||| || | || | || || ||||| || || || ||||| || | Sbjct 4632 AGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCAATCCTGTATATGGAAGGCGCCTGTG 4573 Query 187971 GCGTGCGCTTGAA-GCCAACTGATAAAGTCAGTGAAGTTTTCAAACACGGTCGTTCAAGT 188029 | || ||| |||| || || || || || ||| | |||||| ||||||| || Sbjct 4572 GTGTACGCCTGAAAGCGGAC-GACAACGTTGCTGAGATCTTCAAAAACGGTCGGGCATCG 4514 Query 188030 ATCTCGCTTGGTTATATCGGGTTACACGA-AGCAGTAACGTTGCT-TTCGCCAGATAAAG 188087 ||||| | || ||||| ||| | || || | || ||||| ||| || | || | | Sbjct 4513 ATCTCATTGGGCTATATTGGGGTTCATGAGACCATTAACGC-GCTGTTTGGCAACCAGAC 4455 Query 188088 ACATGCATACGTT--TGAGTCACAGCACAAACAATTCCTCGCTGAAAAGATTGTGGAAAC 188145 ||| | | || | |||| || || || | |||| || || | | Sbjct 4454 ACACGTGTTCGATAATGAGCAACTGCGTGAAAAGGCGGTCGCC------ATCGTCGCACG 4401 Query 188146 TCTTAGAGCGTACACAGATGCATGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAG 188205 || | ||| || ||| ||||||||| || |||||||||||||| || ||||| Sbjct 4400 CCTGAAAGCCGCGACCGATCAGTGGAAAGAAGAAACCGGCTACGGTTTCAGCCTTTACAG 4341 Query 188206 TACACCAAGTGAATCGCTGTGTGATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGT 188265 ||| || |||||| |||||||| ||||| || ||| ||||| | ||| ||| || Sbjct 4340 TACGCCGAGTGAAAACCTGTGTGACCGTTTTTGCCGTATCGACACCGCTGAATTCGGCGT 4281 Query 188266 CATTACAGGTATCAATGACAAAGACTATTACACAAACTCGTTTCACTTAGACGTGTTCAA 188325 | |||| | | || |||| || ||||| ||| || ||||| |||||| || Sbjct 4280 GGTACCAGGCGTGACCGATAAAGGTTACTACACCAACAGCTTCCACTTGGACGTGGAGAA 4221 Query 188326 GAAAGTTAACCCATTTGAGAAAATTGATTTTGAAGCTG-CATACCCAATTCATGCAAACG 188384 ||| || || || | ||||||| || |||||| ||| | |||||| | ||||||| Sbjct 4220 GAAGGTGAATCCTTACCAGAAAATCGACTTTGAA-CTGCCCTACCCACCGCTGGCAAACG 4162 Query 188385 GTGGTTTCATCTGTTATGCTGAGTTCCCGAATATGCGAGATAACATCAAAGGTCTAGAGC 188444 | || ||||| || || | |||| ||||| ||| | ||||| | |||| || || Sbjct 4161 GAGGCTTCATTTGCTACGGCGAGTATCCGAACCTGCAACATAACCTTAAAGCGCTGGAAG 4102 Query 188445 GCGTATGGGATTATGCTTACACTAAAGTAGCTTACTTCGGTACGAATACCCCGATTGATC 188504 ||| |||||||| ||| | || | || | ||| || ||||| ||||| ||| Sbjct 4101 ACGTCTGGGATTACAGTTATAGCCGTGTGCCCTATTACGGCACCAATACGCCGATCGATG 4042 Query 188505 AGTG 188508 |||| Sbjct 4041 AGTG 4038 >seq2351 Length=10305 Score = 134 bits (148), Expect = 2e-26 Identities = 289/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 78627 CTTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGT 78686 |||||| | || |||| || ||| ||||||| || || ||||| ||| | ||||| Sbjct 2552 CTTCTATGACGCGATTTCTACCTTCAAGATTTCATTGCCAACGCCGATCATGTCCGGCGT 2611 Query 78687 TCGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCA 78746 |||||||| || || ||||| || || || || |||||| | |||||| || | Sbjct 2612 GCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCTGGA 2671 Query 78747 TTCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGG 78806 ||| || || | | | | || || | ||| || ||||||| |||||||| Sbjct 2672 TTCCATTAACGCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTATCGG 2731 Query 78807 TGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG-TTCGTTCAGGTGAG--ATTCG 78863 |||||| |||| |||||||| | ||| || |||| ||||| |||| Sbjct 2732 CATTAACGCCGGTCGTATTCGTGC-GCTGGGTAGCCCGATTCGCGGTGGTGAAGCATTC- 2789 Query 78864 TCACACTGG-TGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTC 78922 || ||||| |||| |||| |||| ||||| || || || || || ||||| || || | Sbjct 2790 -CATACTGGCTGTA-TTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGCTCAC 2847 Query 78923 AAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTG 78982 | || ||||| || || || || || || | ||||||| | ||||| | ||||| | Sbjct 2848 AGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAAGTGG 2907 Query 78983 AAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTG 79042 ||| ||| | || |||||||||||| || || |||| ||||| | ||||| || | Sbjct 2908 AAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCACCTCG 2967 Query 79043 ACTAC 79047 | ||| Sbjct 2968 ATTAC 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790117608222720