Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq3413 201 3e-47 seq3282 113 1e-20 seq2452 102 2e-17 >seq3413 Length=1126 Score = 201 bits (222), Expect = 3e-47 Identities = 274/382 (72%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 31234 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 31293 ||| | ||||||||| || ||||| |||||| ||||| || ||||| || || | ||| Sbjct 627 TTCGATGATCCGCTCTGCTTCGTCGCTGTCGTAAATGCCAGCAAACCCAAATGCCATGCG 686 Query 31294 TGCGCACTGGATCATTGCCTTGTGGCGAAGCATCCGGCGCGGATGGGACTGCCAAGGCTG 31353 ||| ||||| |||| || ||||||||| ||||| ||| || || || ||||| ||||| Sbjct 687 TGCACACTGAATCAGTGACTTGTGGCGCAGCATACGGGTGGGGTGTGATTGCCACGGCTG 746 Query 31354 GGTGTTCCGCTTGCACTCGGCCATGTACTCAGTCGCGCTGATGGCATGGCTGCGGTCCTT 31413 ||| || |||| |||||| ||||||| || || | ||| || |||| || || Sbjct 747 GGTATTGCGCTCACACTCGCCCATGTATTCGGTGACTACAGTGGGGTGTTTGCGATCTTT 806 Query 31414 CCGATAGATCTTGCAGGTGCATTCGGTTCCCTGCTGGTCCATTGAGAATTCCATGCCATC 31473 || || ||| |||| || || || | | || || ||||||||||||||| Sbjct 807 ACGGTAAATCCTGCAAGTCGATGCGCCCTCGTCCTTATCGTAGCTGAATTCCATGCCATC 866 Query 31474 GAACTGTGGGTTCTCGTTGATGATCCGAGCCCAGCCATCCACGCCAACAACTGGCACGAT 31533 ||| || || | ||||| |||||||| ||||| ||||| || || ||||| || || || Sbjct 867 GAATTGCGGATGTTCGTTAATGATCCGCGCCCATCCATCGACACCGACAACCGGAACAAT 926 Query 31534 GCCGTTGTTCTTGTCGGGGAATGCGTACAACTCCTTGGTGAAGGGGTTCAGTTTGTACTG 31593 || | |||||| || || ||||| | || || || | ||||| ||| |||||| Sbjct 927 CCC---GCCCTTGTCAGGAAAGGCGTAAATTTCTTTTGTCCACGGGTTGAGTCCGTACTG 983 Query 31594 GTCTGCCACGATCAGCAGGGCG 31615 || || ||||| || |||||| Sbjct 984 GTTGGCAACGATAAGTAGGGCG 1005 >seq3282 Length=7904 Score = 113 bits (124), Expect = 1e-20 Identities = 228/336 (68%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | ||||||||| ||| ||||| || | | || || || || || ||| Sbjct 7598 CCGCCCAGCATCTGCATGGAGCCGGAAATGTCTACCACTACTTCCGTGGTATAACGATCC 7539 Query 30116 TGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGA 30175 || ||| ||| ||||||| || || || | ||| ||| || || |||| || ||| Sbjct 7538 TGCCCGCTCTGATCCTGCCATTTACGCGTGCGCAGTTGACCTTCAACATACACCTG-TGA 7480 Query 30176 CCCTTCTTT-ACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTG 30234 |||| | || | || | | || |||| ||| ||| | | | |||||||| Sbjct 7479 GCCTTTGCGCAGGTATTCTCCAGCCACTTCAGCCAGCTTTCCGTACAGCGTGACGCGGTG 7420 Query 30235 CCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGC 30294 |||||| |||||||| | |||| |||||||||||||| |||| | || ||||| Sbjct 7419 CCATTCTGTGCGCTCTTTCTGCTCACCGGTCTGCTTGTCGCGCCAGGTATCTGACGTGGC 7360 Query 30295 GAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACC 30354 || || | ||| | || ||| ||||| |||| ||| || ||||||||| || Sbjct 7359 CAGAGTCAGGTTAGCAACGGCACCACCGTTCGGCAGATAACGGACTTCCGGGTCTTGCCC 7300 Query 30355 GACGTTGCCAACCAGAATGACTTTGTTAACGCCTCT 30390 | || || || ||||| ||||| ||||||||||| Sbjct 7299 CAGATTCCCGACAAGAATCACTTTATTAACGCCTCT 7264 >seq2452 Length=2364 Score = 102 bits (112), Expect = 2e-17 Identities = 227/341 (67%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 30051 GCTTTCCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGC 30110 |||| ||||||| ||||||||| ||| || ||||| | | || |||||||| | Sbjct 2205 GCTTACCGCCAAGCATCTGCATTGATCCGCCAATATCGACAACTACTTCCGTTGTGTATC 2146 Query 30111 GGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTT 30170 ||| || || ||| | |||||||| | || | | | ||||||| || | | Sbjct 2145 TGTCTTGCCCTGACTGGTCTTGCCACTTCCTTGTGCGCAATTGGCCCTCGATATATACCT 2086 Query 30171 GCTGACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGC 30230 || |||||| || | | || | | ||| |||||||| ||| | | | |||| Sbjct 2085 GCGAACCCTTGCGTAGATATTCACCAGCCACCTCTGCCAACTTTCCGTACAGCGTGACGC 2026 Query 30231 GGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGG 30290 | |||||||| |||||||||| |||| || ||||||||||| |||| || | Sbjct 2025 GATGCCATTCCGTGCGCTCCTTCTGCTCTCCAGTCTGCTTGTCTCTCCATGAATCAGAAG 1966 Query 30291 TGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCAC 30350 |||| | || | ||| | ||| || ||| | || | ||||| || ||||| Sbjct 1965 TGGCTACAGTCAGGTTTGCCACTGCCCATCCGCTCGGTGTGTAGCGCACTTTGGGGTCTT 1906 Query 30351 CACCGACGTTGCCAACCAGAATGACTTTGTTAACGCCTCTC 30391 |||| || || || ||||| |||||||| ||||||||| Sbjct 1905 GCCCGAGGTGTCCCACGAGAATCACTTTGTTTACGCCTCTC 1865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145631537518592