Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023594.2 Length=54791 Score E Sequences producing significant alignments: (Bits) Value seq3777 248 3e-61 >seq3777 Length=50401 Score = 248 bits (274), Expect = 3e-61 Identities = 477/697 (68%), Gaps = 10/697 (1%) Strand=Plus/Minus Query 21206 GGGATGTTGAGGAAATGGTATTTGTCAGAGGAGTTGCCACGTAAGAGATAACCTACGAGG 21265 || || || || |||| ||||| || || ||||| || | ||| ||||| || || | Sbjct 25140 GGTATATTAAGATAATGATATTTATCTGAAGAGTTACCTCTTAACAGATAGCCAACTAAA 25081 Query 21266 TCTTCGTCGTGCACCCGCTGCATGATAAC-CACGATTGGCGTGCGTGCGCAGGTAATT-- 21322 |||||||| || |||| ||||||||| | ||| || || || | || || ||||| Sbjct 25080 TCTTCGTCATGAACCCTCTGCATGATGATACAC-ATAGGTGTTCTTGGACATTTAATTAA 25022 Query 21323 --TGCTCACCATCAGGGCCAGTAACAACGCCGTCATTAGCGAGTCGCGACATGAACGTGT 21380 ||| | | ||| || | || ||| || ||||| || || || ||||| || || | Sbjct 25021 ATTGC-CTTCTTCAT--CCTG-AATAACACCATCATTGGCAAGACGGGACATAAAAGTAT 24966 Query 21381 TGTCGTAGCGGTCATTGATTTCTGTCCGTACTTGATTGGAATACGCGTCTTTCGGTTTGA 21440 |||| | | |||||| ||||||| ||||||| ||||| |||||||| ||||| | Sbjct 24965 TGTCAAATCTGTCATTAATTTCTGACCGTACTGTTCCTGAATAAGCGTCTTTGGGTTTAA 24906 Query 21441 TGACGTCGTCCACCACCAAGCAGCCAGAGTAGACAATCGAGAGTGAACCAGCACCCTTCC 21500 | ||||| || || || || || || || |||||| || | |||||||||||| || | Sbjct 24905 TAACGTCATCGACAACGAAACAACCGGAATAGACAGGGGATAATGAACCAGCACCTTTTC 24846 Query 21501 CTGTCATCTTACCGCCCGTTGGCACAGCGTTCATTACACCAGCACGTGTGGTACCCCAAC 21560 |||| | || ||||| || ||||| || | | || ||||| || ||||| | Sbjct 24845 CTGTAAGTTTCCCGCCGGTAGGCACGGCATGTAACGTTCCTTGCCGTGTCGTTCCCCATC 24786 Query 21561 GTTCCAGCGAGCGCTTGTTCGGGTCAATGCGTACAGCAGGGAAGATCTTTTGGAACAGGC 21620 | || || || | |||| || | || | ||| |||||||| || |||| | Sbjct 24785 GCTCTAGAGATCTTTTGTCTGGATTGATTCTTACTTTGGGGAAGATTTTCATAAACATGG 24726 Query 21621 CTTCCAGCATAATCTGTCTGATATAACCTGATGATTCCGACACAACGTCATCCGCATACG 21680 || ||| ||| |||||||| || || |||||| || || ||||| ||||| | Sbjct 24725 GGTCAGTCATTATCGCCCTGATATATCCAGAGGATTCCTGAACGACATCATCTGCATAGG 24666 Query 21681 ACGTGATGATATTGTGGCTAGTAGGGTTACAACAGAAAGAGTACAGCGGGAGGAAGATAC 21740 | || || ||||| || || || ||| || ||||| ||||| || | ||| ||| Sbjct 24665 ATGTTATAATATTCTGACTTCCCGGATTATGGCAAAAAGAATACAGAGGTAAGAAAATAG 24606 Query 21741 TAAGGATTTGAGTTTTAGAATGCCGTGGAGGAATGCACACGATACCACGGTCGATTTCGC 21800 | || || ||||||||||||| ||| |||||| || || | || ||||| | Sbjct 24605 ATAAAATCTGTGTTTTAGAATGCCTTGGTGGAATGGTAACAATGAGTCTATCTATTTCAC 24546 Query 21801 CTAAGATAATCTTTTGGCAGAAGTCGAAAATGATTTCGTGGAAATCTTGCAGTTGGAACT 21860 | ||||| || ||||| | || || | || ||| |||||||| ||| |||| Sbjct 24545 CATCGATAACTTTCTGGCATACATCAAATACAATAGAGTGAAAATCTTGTTTTTGAAACT 24486 Query 21861 TGAAGCCCATTTGCAACTCAAAACACCACAATGAGAA 21897 |||| ||||| || || | ||||||||| | |||||| Sbjct 24485 TGAATCCCATCTGTAATTGAAAACACCAAAGTGAGAA 24449 Score = 116 bits (128), Expect = 1e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 16650 TCGCCACGCCATACAGTCGAGTTGATGTACTCTTCGTAACCACGACGTGCAGCCATGGTC 16709 || ||| ||| |||| || || || |||| |||||||||| | ||||| ||| Sbjct 30476 TCACCATACCAGACAGCAGAATTAATATACTGTTCGTAACCATGTGTAGCAGCATTGGCT 30417 Query 16710 TTACGAGCTTCTAACGGCATACCTGCCATAGCAGCAGCAGAGATTTCATCGATGTCCCAA 16769 ||||| |||| | |||||| |||| | || || ||| | |||||| || || | Sbjct 30416 TTACGCCCTTCCAGCGGCATCCCTGTAACCGCCGCTGCATTCACTTCATCAATATCAAAG 30357 Query 16770 TCGTAGGCACAACCGACAGACTTGACGGTAATCGAATATTCTCTACCAGAAATATCTGAT 16829 || ||||| ||| || ||||| || ||||| | |||| |||| || |||| |||| Sbjct 30356 TCATAGGCTGTACCCACTGACTTTACAGTAATACTCTCTTCTTTACCGGAGATATTTGAT 30297 Query 16830 TTAGGTAAGTCAGTAGCACGGGCGTTAATCACCTGTGCGCGACCAACACGGTCG 16883 || |||||||| || || | ||| ||||||||||| || ||| ||| ||||| Sbjct 30296 TTTGGTAAGTCTGTTGCTCTGGCATTAATCACCTGAGCTTTACCTACATGGTCG 30243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175201344123648