Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq2333 315 1e-80 seq2351 159 5e-34 >seq2333 Length=8475 Score = 315 bits (348), Expect = 1e-80 Identities = 719/1073 (67%), Gaps = 12/1073 (1%) Strand=Plus/Plus Query 27961 TTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAGCGACGCTGGCTTTAACG 28020 ||||| || |||||||| || ||||| | || || || |||||||| | |||||| ||| Sbjct 4560 TTCAGGCGTACACCACAGGCGCCTTCCATATACAGGATTGGAGCGACACGGGCTTTGACG 4619 Query 28021 CCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGATTTCCATACGTTCTTCC 28080 || ||| || | ||| | |||||| |||| || | | || || ||| | ||| Sbjct 4620 TTTTCCAAACGCTCGATGCGCGTCATCAACGCTTTTTTCGCCAGTTGCAGACGATTATCC 4679 Query 28081 AGAAGATCCCAGAAACGCATAGGATTGCCATTTGAATCAAGAGCGATTCGCGGCAAGTTC 28140 | || | |||||||||| || | || || || ||||| ||||||| ||| Sbjct 4680 AACAGGTTCCAGAAACGCTCTTCGTTATGTTCTGCTTCCAGCGCGATGCGCGGCAGGTTG 4739 Query 28141 AGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAACACCGTTTTCGTCTTCC 28200 || ||| || || | |||||| || || || || | | || | ||| || | | Sbjct 4740 AGGCTGATTACCCCGAGGTTGTTGCGACCATCGTGGATCTGCTTGCCCTCTTCCTCATAC 4799 Query 28201 CAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAACTA-CCAGTCACTTCAAC 28259 || | | |||||| ||||| ||||| || || |||| | || || || | ||| Sbjct 4800 ACGCCAAG---GAAACTGCGGCAGCCCATAGGCGTCTT-AAACGAGCCGGTAACCTTAAC 4855 Query 28260 GATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGCATTCCAGAGCCAA 28319 | || ||| || | ||||| ||||| ||||| || || ||||| ||||| |||| Sbjct 4856 CACCTGATCGTAATTGAGAATATCCGGGTACATCCGCTTGCTGGCGCAATCCAGTGCCAG 4915 Query 28320 CTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAGTTGTGTCCGTCTTTCAGAGCGAA 28379 || ||||| ||| |||||| | | || ||| ||||| | |||||| Sbjct 4916 TTGCTTGATGTCATAGTTCGGATCGGCAGCCTTGTGATTGACACCGTCGCGGATAGCGAA 4975 Query 28380 TACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCCAAACGAACTTT 28439 |||||||| ||||| || | ||| ||| | ||| || ||||| || | || Sbjct 4976 CACCAGTTTGGGGAACACCGCGGTTTTACGGTTTTTGCCCAGACCGGCAATGCGGTTGCG 5035 Query 28440 CAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCAAAGCCGAAGGT 28499 |||||| | || |||||||| || ||||| | || || ||||| || || ||||| Sbjct 5036 CAGGATGGATTGCTGAATCAGGCGCGATTCCCAACGGGTGCCGAGACCGAAACCAAAGGT 5095 Query 28500 -ACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATACTCCAGACCTT 28558 ||| ||||| || |||||||| |||| |||||| || || || ||||| ||||| | Sbjct 5096 GACA-AACGGTGTCTGACCATTGGCGGTGTGCAGCGTATTTACTTCATATTCCAGCGACT 5154 Query 28559 GCATAGCATCATAT-ACAGCTTTGCGAGTCTTTGCAATAGCATATTGCTGTTGATCTGGA 28617 | | || || || || ||| || | || | ||||| | ||| ||| Sbjct 5155 GGAAGGCGTCGTAGCACTCTTTTTCGGTACGAGACAGT-GCATAGGCGTCCGCATCGGGA 5213 Query 28618 ATTTTCCAGTAACGAGCTTCATCCAAGTGCTTTTCGTGTGTCATTTTAACATACGGTGCC 28677 || | ||| | | ||| ||| |||||||| | | | || |||||||| Sbjct 5214 ATGTGCCACTCATCAGCAGTTTCCCGGTGCTTTTTAAGGCTGGCGGTGACGAACGGTGCC 5273 Query 28678 AGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTACTTGAGCG 28737 || | ||| || || || || || ||| | ||||| || ||||| ||||| || || ||| Sbjct 5274 AGAATTTCATCGATACGGTTAATGGTGGTGCCGCCGTAGATGTGGCTTGCCACCTGCGCG 5333 Query 28738 ATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGATTTGAGCA 28797 |||||||| || |||| || | ||||| || ||| ||| || | ||| || | || Sbjct 5334 ATGATTTGGGCCGTCACTGCTGTCGCGGTTGAGATGGATTTTGGTGGCTCAATCTCCGCG 5393 Query 28798 TTACCCATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTAAAC 28857 |||||||| |||| || ||||||| ||||||| || |||| ||| ||||| ||| Sbjct 5394 TTACCCATCTTGAACCCCTTGGTCAACATGCCTTCAAGGTCGATCAGCATACAGTTGAAC 5453 Query 28858 ATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTGTGCT 28917 || ||||||||||| || || || ||||||||| ||||||| ||| ||| || || Sbjct 5454 ATCGGGAAGAACGGGGAGTAGTCCAGATCGTGGTAGTGAATTTCACCGCGTTCATGAGCA 5513 Query 28918 TGCATAACTTCAACAGGCAG---ATAATGCTTGGCGAAATGCTTACTAACGATACCAGCT 28974 ||| || || ||||| || ||||||||| | ||||| ||||||||| || Sbjct 5514 AGCACCACGTCGCGCGGCAGGATATGTTGCTTGGCGTAGTGCTTGGCAACGATACCGGCC 5573 Query 28975 ACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATT 29027 | || ||||| || || || ||||| || ||||||||| || || || || Sbjct 5574 AGCAGGTCGCGCTGGGTAGGGATTACTTTACTGTCTTTGTTGGCGTTCTCGTT 5626 >seq2351 Length=10305 Score = 159 bits (176), Expect = 5e-34 Identities = 275/392 (70%), Gaps = 12/392 (3%) Strand=Plus/Minus Query 32827 CCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAAGG 32886 ||||| || | ||| | | || || ||||||| || ||||||||| ||||| || Sbjct 2974 CCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGC 2915 Query 32887 ATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCACGTACA 32946 | |||| ||||| |||||||||| ||| ||| ||| || || || || || || ||| Sbjct 2914 AGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACA 2855 Query 32947 CCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATACCA 33006 ||||||||||||||| ||| || || ||||| || | ||| |||| || ||| ||| Sbjct 2854 CCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAAGGAATACAGCCA 2795 Query 33007 GTATGACGAA--CCTCGCCAGAACGAATTCTAG--AGCCTTCAGCACGAATAGCACCACC 33062 ||||| ||| | || ||| |||| || | | || | ||||||||| ||| | Sbjct 2794 GTATG--GAATGCTTCACCACCGCGAA-TCGGGCTACCCAGC-GCACGAATACGACCGGC 2739 Query 33063 ATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAGCGGTTGCG 33120 || || |||||||| || | || ||| | || | ||||||| ||| | ||| ||| Sbjct 2738 GTTAATGCCGATACCGGCACGCT--GTGAAACGTATTTCACGATAGCACTGGAGGTGGCG 2681 Query 33121 TTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGGTC 33180 |||||| ||| || || || | |||||| ||||| ||||| ||||||||||| Sbjct 2680 TTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGACGGGTT 2621 Query 33181 GGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 || ||||| || || | || || || || || Sbjct 2620 GGGGTACGCACGCCGGACATGATCGGCGTTGG 2589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710255969556480