Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27]
3,968 sequences; 388,752,668 total letters
Query= NC_023693.1
Length=148612
Score E
Sequences producing significant alignments: (Bits) Value
seq3741 127 2e-24
>seq3741
Length=9757
Score = 127 bits (140), Expect = 2e-24
Identities = 224/324 (69%), Gaps = 2/324 (1%)
Strand=Plus/Minus
Query 25457 ATATCTGGATCATTCCACGCAAGACTACACTCTGAAGTCGGATCGTAATATTCTGTACAT 25516
|| || ||||| |||||| |||| || || | || | |||||||||||| |||
Sbjct 4333 ATGTCAGGATCGTTCCACAATAGACAACCTTCATCGGAAGGTTGGTAATATTCTGTGCAT 4274
Query 25517 TTGTATTCAAAATCAGCAATATCACTAATCACAACAAAGCCATGAGCGAAACCAGGAGGA 25576
||||||||||| || || || || | |||| |||||||||| || | || || ||
Sbjct 4273 TTGTATTCAAAGTCTGCGATGTCGGAGAGCACAGCAAAGCCATGTGCCAGCCCTGGTGGC 4214
Query 25577 ATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAGAACACCTACCCATTCTCCAAATGTT 25636
| |||||| || ||||| || | || | | | ||| || | ||||| ||| | |
Sbjct 4213 AGCCAAAACTGCGTTTTGTTTTCCTCGGTGAGTAAAACGCCAAACCATTTGCCATAGCTA 4154
Query 25637 GGACTACCAACCCTAATATCTACAGCAACATCATAAACTTCACCACGAAC-ACAGCGTAC 25695
|| | | | ||| || || | |||||||||||||||||||| || ||| || ||
Sbjct 4153 GGGGAATCTCGGCGAATGTCGACTACTACATCATAAACTTCACCACGCACTACA-CGCAC 4095
Query 25696 CAACTTCCCTTGTGGGTTTTTCTTTTGAAAATGAAGCCCACGTAGAACTCCTCGGATAGA 25755
|| || || |||||| | | || || ||||| ||||| || || || | | | ||
Sbjct 4094 CAGTTTTCCCTGTGGGCGTGTTTTCTGGAAATGCAGCCCGCGCAGTACACTTTTCGTTGA 4035
Query 25756 ACGTGAATGGTTATCTTGGACAAA 25779
|||||| ||||| || || |||||
Sbjct 4034 ACGTGAGTGGTTGTCCTGCACAAA 4011
Score = 95.1 bits (104), Expect = 1e-14
Identities = 502/788 (64%), Gaps = 33/788 (4%)
Strand=Plus/Minus
Query 26012 AAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGAACA 26071
|| ||||| ||||||||||| || | |||||| || || | || || || | ||||| |
Sbjct 3687 AAGGCAATTTCTTCCAGGCAAGCTATCTTCATCCCCTGACGTTTTTCAATGGTATGAATA 3628
Query 26072 AATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTT 26131
|| || || ||||| || || || ||||| || || ||||||||||| | |||||||
Sbjct 3627 AACTGCGAGGCTTCAATCAGGCTATCATGGGTGCCGGTATCCAGCCAGGCAAAACCTCGG 3568
Query 26132 CCTAGTTTACAG--ACACGTAAAGTCTTTTCTT--TCC-AGTACATCTCATTTATATCCG 26186
|| || ||| ||||| ||| | | ||| ||| | ||||||| || | |
Sbjct 3567 CCCAG----CAGTTCCACGTTAAG-CGTGCCTTGCTCCAAATACATCTGGTTCAGCGTAG 3513
Query 26187 TAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAACAGAAT 26246
| || ||||| || || | || ||||||||||| |||||| | | | || ||
Sbjct 3512 TGATTTCTAATTCACCGCGTGCGGAAGGTTTAACCTGCTTAGCCATTTCGACTACGTTAT 3453
Query 26247 TATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTT 26306
| || ||||| || | ||||| | || || | ||| || | ||||| ||||
Sbjct 3452 TGTCATAAAAATAGAGCCCTGTCACCGCCCAGCTAGATTTGGGCTTAAGCGGTTTCTCTT 3393
Query 26307 CAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGATCAT 26366
|||| | || | || | |||||| || || || ||||| | || || ||
Sbjct 3392 CAATCGAGAGGGCTTTGAAATCTGCATCAAATTCCACTACGCCAAAGCGCTCTGGGTCGG 3333
Query 26367 TTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGCAGAAT 26426
| || ||||| ||||| | | || || || || | || || | | |
Sbjct 3332 TCACCTGATAACCAAACACCGTTGCGCC----TTGTTCT-----TGCGCTACCGGACTTT 3282
Query 26427 CTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACAG 26486
| | | |||| || ||||| ||||| | | ||| ||||| | | | ||| |||
Sbjct 3281 CCAGCTTTTTACCGAAGCTCTGGCCAAAATAGATATTGTCACCCAAAATCAATGC-GCAG 3223
Query 26487 AATCTTCACC---AATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGC 26543
||||| ||||| | |||||||| |||||||| | ||| | || | ||||
Sbjct 3222 --CGCTCACCGTTGATAAATTCTTCACCAATGATAAACGCCTGTGCCAGGCCGTCAGGGC 3165
Query 26544 TATCCTGTATTGCATA-CTGTAGGGAAATACCAAAAGAAGAACCATCACCT-AGAAGATT 26601
| ||| ||||| ||| ||| |||||||| ||||||||| | | | |
Sbjct 3164 TTGGCTGCTCCGCATAGCTG-AGGTTGATACCAAAGTGGCTGCCATCACCTAACAGGCGT 3106
Query 26602 TACAA--AATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAA 26659
| || | || | ||||| || || | || || | || ||| ||| || |
Sbjct 3105 TGGAATGAGGGAA---GGTCTTCGGGGGTACTGATAATCAAGATATCCTGAATGCCTGCC 3049
Query 26660 AGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGT 26719
| ||| || || |||||||| ||||| | ||| ||||| || || || || | ||||||
Sbjct 3048 AACATCAGCACGGAGAGTGGGTAATACACCATGGGTTTGTCATAGATGGGCAGTAGTTGC 2989
Query 26720 TTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATA 26779
|| | || || | |||||||| || || ||| ||| ||||| || | ||
Sbjct 2988 TTCGATATGCCACGGGTGATGGGGTAAAGTCTAGTGCCAGAACCGCCTGCCAATACGATG 2929
Query 26780 CCTTTCAT 26787
||||||||
Sbjct 2928 CCTTTCAT 2921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475406818652160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |