Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023700.1 Length=34553 Score E Sequences producing significant alignments: (Bits) Value seq3688 129 1e-25 seq1892 111 3e-20 >seq3688 Length=22785 Score = 129 bits (142), Expect = 1e-25 Identities = 594/920 (65%), Gaps = 43/920 (5%) Strand=Plus/Plus Query 12053 CATCTTGATCGAGGCCGAGCAGGGTCAACTCCAGGCTCAGGCCGAGCTGTTCATGGACAT 12112 |||| ||| ||||||||||||||| || || | |||||| || ||||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 12113 GGAGGAACGCGACGCCCACCTATTCGCAGAAATGAGCAAGCGCAAGCGCGCTGTCCTCGG 12172 |||||| ||||||| |||||| || || || |||||||||||| || | || | Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGCCGCCGTTCGGTGATGCC 8089 Query 12173 CCTGGACTGGACCATCGAGCCGCCACGCAACGCCTCGGCCGCA-GAGAAGGCCGACGCGG 12231 || |||| ||| | |||||| || | || | |||| || ||||| |||| Sbjct 8090 GCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATG-CGCAGGAAAAGGCGATGGCGG 8148 Query 12232 AGTATCTCCACGAGC---TGCTGCTC-GACCTGGAGGGCATTGAAGACCTCATGCTCGA- 12286 | | || ||| | || | || |||||| || ||||| || || |||| Sbjct 8149 A----CGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 12287 TTGCATGGATGGCGTCGGCCACGGCTATAGCGCTATCGAGCTGGACTGGTCCCTCCAGGG 12346 |||| |||| | | | |||||||||| | ||| | || ||| ||| | || Sbjct 8205 TTGC-TGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAAACAGGCGGA 8263 Query 12347 ACGGGAGTGGTTGCCGCAGGCCTTCGACCACCGGCCGCAAAGCTGGTTTCA-ACTG-AAC 12404 | ||| |||| |||||| || | || |||||| ||||||| || || | ||| Sbjct 8264 AAACATCTGGCTGCCCTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCGCAAC 8323 Query 12405 CCGGACGACCAGGACGAGCTGCGCTTGCGCGATAACAGCATCGCGGGCGAGGTACTCCAG 12464 || | |||| ||| | ||| || || |||| | | || | | || | Sbjct 8324 CC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCTTAAT 8381 Query 12465 CCGTTCGGCTGGATCATGCACAAGCCGCGTTCGCGC----TCGGGATACGTGGCGCGTAG 12520 || || |||||| | |||| ||| || || || | || || || Sbjct 8382 CCCTTTGGCTGGCTGCTGCA----TCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAAG 8437 Query 12521 CGGGCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCAAG--CACTACTCCACGGCCGAC 12578 ||| |||||||| || |||| ||| | |||||||||||| | | || | || ||| Sbjct 8438 CGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCG--TGAC 8495 Query 12579 CTGGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTA-CCCGCCCGG 12637 ||||||||| | || ||||||||||| ||||||| ||| | || | || ||| | || Sbjct 8496 CTGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGGG 8555 Query 12638 CACGCC--CGACGAAGAGAAGGTGACCCTGCTGCGGGCCGTGACCGGCCTCGGCCATGCC 12695 ||| || ||||| ||| | |||||| |||| || || ||| || ||| | Sbjct 8556 ---GCCAGTGAAGAAGAAAAGAACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAAC 8612 Query 12696 GCAGCAGGCATCATCCCCGAGAGTATGTCCATCGAGTTCCAGGAAGCGTCGAAAGGCTCG 12755 || | ||||| |||| ||| | | | ||| || || || | | || | Sbjct 8613 GCCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGGGCAG 8672 Query 12756 GCCGAGCCGTTCATGGCCATGATGCGCTGGTGCGATGACTCAATGTCGAAGGCCATCCTG 12815 | ||| |||||| | ||||||| |||||||| | | ||| |||| ||| ||| Sbjct 8673 GTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCTG 8732 Query 12816 GGCGGCACGCTCACCAGCCAGACCAGCGAGTCGGGCGGTG--GTGCCTATGCCCTGGGGC 12873 |||||||| || |||| |||| ||| | ||| | | | || | ||||| || Sbjct 8733 GGCGGCACCCTGACCACCCAG----GCG-GACGGCAAGAGCAGCACCAACGCCCTAGGCA 8787 Query 12874 AGGTCCATAACGAGGTGCGCCATGACCT-TCTGGCGGCGGATGCCCGACAGCTCGCCGCC 12932 | || |||||||| |||||||| || || | | | || ||||| ||||| |||| | Sbjct 8788 ACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGC-GATGCGGTGCAGCTGGCCGGC 8846 Query 12933 ACGCTGAGCCGAGACCTACT 12952 ||||||| ||| ||||| || Sbjct 8847 ACGCTGACCCGTGACCTGCT 8866 Score = 129 bits (142), Expect = 1e-25 Identities = 166/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 13837 CCGGCTGGAAACGATCTACCAGACCAACGTGCAGTCGGCCTACATGGCCGGGCGCTAT-- 13894 ||||||||| || || | | ||||| || || ||||| ||||||||||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 13895 GCCGCCGCATACGAGGCCAGGGAAACTCACCCTTACTGGATGTATGTGGCCGTCATGGAC 13954 || || || |||| | || | || |||||| ||||||||| || |||||| Sbjct 9774 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 13955 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 14014 ||| |||||| ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 14015 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCG 14061 |||| | | | | |||||||| |||||||||||||| ||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCG 9938 >seq1892 Length=4253 Score = 111 bits (122), Expect = 3e-20 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 9629 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGCCAG 9688 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 9689 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGGAAA 9748 ||||| ||| | || ||||| | ||||| | | ||| || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 9749 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCACAATCGGCGCAGTTGCTGGCC 9808 | | || | | || ||| || |||||||||||| | | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 9809 GGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTCCAG 9868 || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 9869 GCCACCATGGA 9879 |||| |||| Sbjct 151 ACCACGCTGGA 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110442795690240