Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq2351 161 1e-34 seq2656 89.7 5e-13 >seq2351 Length=10305 Score = 161 bits (178), Expect = 1e-34 Identities = 243/344 (71%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 122019 ATGTTGCGGATGATGTGGGTGTACGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTC 122078 || ||||||||||| ||||| || ||||| || || || || || || ||||| || Sbjct 4728 ATATTGCGGATGATATGGGTATAGGAACGGGAATGGATGGTTTCTGAAAATGCCCAGGTT 4669 Query 122079 TCCACCCAAGTTTCCAGGGTGGTGTCGGATACGATCGGCAGAAGAACTGCG---TTCGGG 122135 || | ||| ||||||| | | ||| |||| || | | | |||| |||||| Sbjct 4668 TCTATCCAGGTTTCCAACTCTGGGATGGA---GATCAGCGGTAACAATGCGACGTTCGGG 4612 Query 122136 CCACGGCCCTGTACAGAGTCCAGAAGGATCTGATACTTCAGGTTGCTGATGAAGATGTGC 122195 | || || || | |||||||| || | || || ||||| |||||||||||||||||| Sbjct 4611 CTGCGTCCTTGAATGGAGTCCAGCAGTGTTTGGTATTTCAGATTGCTGATGAAGATGTGC 4552 Query 122196 TTCTCGTGATCCGGAAGATTCATGTAGTCAATTCGGTCACGGGTCACGTTCACCTCTTCC 122255 || || || || || || | ||||| || || || || | ||| | ||||||||| Sbjct 4551 TTTTCATGTTCTGGTAGCGCCTGATAGTCGATGCGATCGCGAGACACATCCACCTCTTCT 4492 Query 122256 GGACGCCAGAAGAATGCCAGTTGCTTTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGC 122315 ||||||||||| || | || || || || |||||||| ||||| | | | ||||||| Sbjct 4491 GGACGCCAGAAAAAGGAGAGCTGTTTCTCTATCAGCTTCTCGAATATTTCATATTTTTGC 4432 Query 122316 TGGTCATAACGAGAAACGTTCGGCGTCTCACCGAGGAACATCGG 122359 || || ||||| | ||||| | || ||| | ||||||||| Sbjct 4431 TGATCGTAACGCGCTACGTTAACGGACTGACCAAAGAACATCGG 4388 Score = 125 bits (138), Expect = 7e-24 Identities = 349/524 (67%), Gaps = 21/524 (4%) Strand=Plus/Minus Query 123352 GCCGAGGTTGATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTT 123411 ||| ||||||| || || || || || || || ||||| || | || || || Sbjct 3377 GCCAAGGTTGAACGCGGAGAGGGTGCAGAGCGCGATCTCACCTTTTTCGTCG------TT 3324 Query 123412 GAGGTCATTGATC-GCGTGAGTAGGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCA 123470 || ||| || || | ||| || ||||| ||||| |||| ||||||||||||||| || Sbjct 3323 GACGTC-TTCCTCAGGGTGGGTTGGCAGCGCAATTTCCAGGCACAGGTTGGACTGACGCA 3265 Query 123471 CCGGGGCCA-GTTCTGGATTGAACGGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATG 123529 | || || | | || || | |||||||||| ||||||||| || || || ||||||||| Sbjct 3264 CTGGTGCGATGGTC-GGTTCAAACGGGCTGTGGGTGTTGCAATGATCGACATGCTGAATG 3206 Query 123530 TAGATGCGTCCTGTCTGACTGCGCTCCTGCATAGCCACGGAGAAGGCTTCTGCTGCGGAG 123589 ||||| || || || ||| || ||||| || ||||| || | || Sbjct 3205 TAGATACGGCCGGTAGAGGCGCGTTCTTGCATCATCAGCGAGAACAGATCGACCGCTTTC 3146 Query 123590 ATGCTTTTCTTAGCCACTTCCGGATCGGC---TTCCAACTTCTCGTACAACTCTTCAAAT 123646 ||| |||||| || | | | ||| | ||| ||| || || || ||| || Sbjct 3145 ATGGATTTCTT-GCGGATGCTG--TCGTCTTTTTCATACTGCTGATATAAGCGTTCGAAC 3089 Query 123647 TTCTTCTGGTCGGAGAAGAAATAC-TCGTACAGCTTGCCACCTGCAACGTTCGGGTGGAA 123705 | | ||| |||| ||| |||| | || ||||| ||| | | | ||| ||| Sbjct 3088 TCATCCTGATCGGCGAA-AAATGCGTCATACAG---GCCGGGTACGTCAGAGGGGCTGAA 3033 Query 123706 CAGAGTGATATTTCGCCCATGTTGCAGACGTGCATACAGCATTTTGTTGATTTGCAGGCC 123765 ||| ||||| | | | || | ||| || ||||| || ||||| | |||| ||| Sbjct 3032 CAGGGTGATTTCTTGTCCTTTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCACGCC 2973 Query 123766 GTAGTCAACGTGACGAGCACGGGTGCTCTCTGTGCCACGGTTGTTCTTCATCACGATCAG 123825 ||| || | |||||| | ||| ||| || ||||||||||||||||| ||| | ||| Sbjct 2972 GTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAG 2913 Query 123826 GTTTTCGAAATCCCAGTGCCACATAGGGTAGAAGTAAGTTGCCG 123869 | |||| | ||| ||||||| ||||| || | ||||||| Sbjct 2912 GCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCG 2869 >seq2656 Length=1220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 148133 TGCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAA 148192 ||| || ||||||||||||||||||||||||| |||||||||| ||||||| |||||| Sbjct 258 TGCCGGCTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGAT 199 Query 148193 CCCTGCATCCAGCACCA 148209 || ||| || |||||| Sbjct 198 TCCGGCAGCCGGCACCA 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486004692971520