Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023856.1 Length=152460 Score E Sequences producing significant alignments: (Bits) Value seq2351 105 7e-18 seq2689 82.4 7e-11 >seq2351 Length=10305 Score = 105 bits (116), Expect = 7e-18 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 31482 CCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTTCTT 31541 ||||| || |||||||||||||| |||||||||||||| || ||||| || || || | Sbjct 2589 CCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTG 2648 Query 31542 ATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGATTAT 31601 || | ||| |||| |||| || || || || || ||| ||| || | || Sbjct 2649 ATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATAC 2708 Query 31602 GTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAGCCCT 31661 || || | || || || ||||| || | | || ||||||| | |||||||| Sbjct 2709 GTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCG 2768 Query 31662 ATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTC-ATAAA-ATAT-CTGACT 31718 || || |||||| | || || ||| |||||||| ||||| || | | ||| Sbjct 2769 ATTCGCGGTGGTGAAGCATTCCATACTGGCTGTATTCCTTTCTATAAACATTTCCAGAC- 2827 Query 31719 GGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAAC-TTGCTATAT 31777 ||| | || || ||||| || |||||| | || |||||| | ||||| ||| | || Sbjct 2828 --CGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTA- 2884 Query 31778 CCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCTTGA 31837 ||| | |||||| || | || | |||| ||||||||||||||||| | || Sbjct 2885 CCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGA 2944 Query 31838 AGAGAACCG 31846 || ||||| Sbjct 2945 AGGCAACCG 2953 >seq2689 Length=2575 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 96737 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCGCCGTTCT 96796 |||||||| | || | ||||| ||||| | |||||||| ||||||| |||||||||| Sbjct 1534 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 1475 Query 96797 ACCGACTGAACTACA 96811 ||||||||||||||| Sbjct 1474 ACCGACTGAACTACA 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487719807897600