Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq3532 187 3e-42 seq3176 147 2e-30 seq2351 95.1 1e-14 >seq3532 Length=11862 Score = 187 bits (206), Expect = 3e-42 Identities = 150/181 (83%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || || |||||||||||||| ||||||||||| |||||||| ||||||||||| || || Sbjct 11329 GGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTAAAA 11270 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || ||||||||||| || ||| ||||||||||||| || ||||||||||| || || ||| Sbjct 11269 CACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTCAAC 11210 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 || |||| ||||||||||| || ||||| || | ||||| || ||||| || || ||| Sbjct 11209 TCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGCCTGTAA 11150 Query 108602 T 108602 | Sbjct 11149 T 11149 >seq3176 Length=18404 Score = 147 bits (162), Expect = 2e-30 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 |||||||||||||||||||| ||||| || ||||||| ||| ||||| | | Sbjct 6494 GGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCCATGGAA 6435 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || |||||||||||||| ||| ||||||||||||| || |||||||| || ||||| ||| Sbjct 6434 CACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGCTTCAAC 6375 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAG 108592 || ||||| ||||||||||| |||||||| | ||||| || ||| || Sbjct 6374 TCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAG 6324 >seq2351 Length=10305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 283/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 27212 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 27270 || || ||||| || ||||||| | ||||| |||||||||| || || || ||| | || Sbjct 2550 CGCTTCTATGACGCGATTTCTAC-CTTCAAGATTTCATTGCCAACGCCGATCATGTCCGG 2608 Query 27271 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 27330 | ||||| ||||| || |||||| || || | ||||| ||| || | Sbjct 2609 CGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCT 2668 Query 27331 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 27390 | || |||||| || || | || | |||| |||| | || || ||||| Sbjct 2669 GGATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTAT 2728 Query 27391 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGAT---CGGTATGGGTGAAG- 27446 || || |||| ||| ||||||| ||| ||| |||| ||||||| Sbjct 2729 CGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGT---GGTGAAGC 2785 Query 27447 -TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGT 27505 ||| ||||| || |||||| |||| ||||||||||| || ||||| ||||| || Sbjct 2786 ATTC--CATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGC 2843 Query 27506 TCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAA 27565 || || || ||| | || || || || || || || ||| ||| ||||||| | ||| Sbjct 2844 TCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAA 2903 Query 27566 GTAGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACAT 27625 || || | ||| | || ||||| || || || ||||| | ||||| | || || Sbjct 2904 GTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCAC 2963 Query 27626 ATGGACTACGG 27636 | || ||||| Sbjct 2964 CTCGATTACGG 2974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541118759178240