Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_024139.1 Length=108483 Score E Sequences producing significant alignments: (Bits) Value seq3176 149 4e-31 seq3532 93.3 3e-14 >seq3176 Length=18404 Score = 149 bits (164), Expect = 4e-31 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 27340 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27399 ||||||| | |||||| || ||||| |||||||||| | ||| ||||| ||||| | Sbjct 6314 ATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCG 6373 Query 27400 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27459 || || || || || || ||||| ||||||||||||||||| ||||||||||| || | Sbjct 6374 AGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGT 6433 Query 27460 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27519 ||| | |||||||| ||| |||||| | | ||| || || || ||||| ||||||| Sbjct 6434 GTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCAC 6493 Query 27520 CTTCGAT 27526 ||||||| Sbjct 6494 CTTCGAT 6500 >seq3532 Length=11862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 27353 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAAC 27412 ||| || ||||| |||| ||||| || ||||| | |||| || || || || || Sbjct 11162 AGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACGCAC 11221 Query 27413 AGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 27472 || || ||||| ||||||||||||||||| || |||||||| || ||||| |||||| Sbjct 11222 TGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGCATC 11281 Query 27473 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27523 ||| ||||||| | || || || || ||||| || || ||||| Sbjct 11282 TTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTC 11332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347004018074112