Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_024330.1 Length=37380 Score E Sequences producing significant alignments: (Bits) Value seq3688 149 1e-31 seq1892 96.9 8e-16 seq3855 89.7 1e-13 >seq3688 Length=22785 Score = 149 bits (164), Expect = 1e-31 Identities = 182/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 15946 CCGGCTGGAAACGATCTATCAGACCAACATGCAATCGGCCTACATGGCCGGGCGCTATGC 16005 ||||||||| || || | || ||||| | ||||| ||||| ||||||||||||||| | Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTAT-C 9772 Query 16006 CGCCGCATACGAGGCCAGGGAAACCCAC--CCCTACTGGATGTATGTGGCCGTCATGGAC 16063 || || | || | | | ||| | ||||||||| ||||||||| || |||||| Sbjct 9773 AGCGGC-TGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 16064 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 16123 ||| |||||| ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 16124 ATCTGGCAACACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCGAATAGTTCCGTTG 16183 |||| | | | | |||||||| |||||||||||||| ||||| || || || Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGGGTACGGGCGCTG 9951 Query 16184 ACGGC 16188 ||||| Sbjct 9952 ACGGC 9956 Score = 138 bits (152), Expect = 3e-28 Identities = 599/925 (65%), Gaps = 53/925 (6%) Strand=Plus/Plus Query 14162 CATCTTGATCGAGGCCGAGCAGGGTCAACTCCAGGCTCAGGCCGAGTTGTTCATGGACAT 14221 |||| ||| ||||||||||||||| || || | |||||| || |||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 14222 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGCAAGCGCGCTGTCCTCGG 14281 |||||| ||||||| |||||| || ||||| |||||||||||| || | || | Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGCCGCCGTTCGGTGATGCC 8089 Query 14282 CCTGGACTGGACCATCGAGCCGCCGCGCAACGCCTCGGCCGCAGAGAAGGCCGACG-CGG 14340 || |||| ||| | ||||||||| | || || |||| || | ||| | ||| Sbjct 8090 GCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATGC-GCAGGAAAAGGCGATGGCGG 8148 Query 14341 AGTATCTCCACGAGC---TGCTGCTC-GACCTGGAGGGCATTGAAGACCTCATGCTCGA- 14395 | | || ||| | || | || |||||| || ||||| || || |||| Sbjct 8149 A----CGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 14396 TTGCATGGACGGCGTCGGCCACGGCTATAGCGCTATCGAGCTGGACTGGTCGCTCCAGGG 14455 |||| |||||| | | |||||||||| | ||| | || ||| ||| | | Sbjct 8205 TTGC-TGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAAACA-----G 8258 Query 14456 GCGGGAG-----TGGTTGCCGCAGGCCTTCGACCACCGGCCGCAGAGCTGGTTTCA-ACT 14509 |||| | ||| |||| |||||| || | || ||||| ||||||| || || Sbjct 8259 GCGGAAAACATCTGGCTGCCCTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACC 8318 Query 14510 G-AACCCGGACGACCAGGACGAGCTGCGCCTGCGCGATAACAGCATCGCGGGCGAGGTAC 14568 | ||||| | |||| ||| | |||||| || |||| | | || | | | Sbjct 8319 GCAACCC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGC 8376 Query 14569 TCCAGCCGTTCGGCTGGATCATGCACAAGCCGCGTTCGCGCTCG----GGATACGTGGCG 14624 | | || || |||||| | |||| ||| || || || | || || Sbjct 8377 TTAATCCCTTTGGCTGGCTGCTGCAT----CGCCATCAGGCCAAAAGCGGCTGGGTAGCC 8432 Query 14625 CGTAGCGGGCTGTTCCGGGTACTGGCCTGGCCGTACCTGTTCAAG--CACTACTCCACGG 14682 ||||| |||||||||||||||| ||| | |||||||||||| | | || | || Sbjct 8433 GAAAGCGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCG- 8491 Query 14683 CCGACCTAGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTA-CCCG 14741 ||||| |||||| | || ||||||||||| ||||||| ||| | || | || ||| Sbjct 8492 -TGACCTGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCG 8550 Query 14742 CCCGGCACGCC--CGACGAAGAGAAGGTAACCCTGCTGCGAGCCGTGACCGGCCTCGGCC 14799 | || ||| || ||||| ||| | |||||| | || || || ||| || | Sbjct 8551 ACGGG---GCCAGTGAAGAAGAAAAGAACATGCTGCTGTGGGCGCTGCGCGACCTGGGGC 8607 Query 14800 ATGCCGCAGCGGGCATCATCCCCGAGAGTATGTCTATCGACTTCCAGGAAGCGTCGAAAG 14859 || ||| | ||||| |||| ||| | | | ||| ||| || || | | | Sbjct 8608 ATAACGCCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGG 8667 Query 14860 GCTCGGCCGAGCCGTTCATGGCCATGATGCGCTGGTGCGATGACTCGATGTCGAAGGCCA 14919 | || ||| |||||| | ||||||| |||||||| | | ||| |||| || Sbjct 8668 GGCAGGTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCA 8727 Query 14920 TCCTGGGCGGCACGCTCACCAGCCAGACCAGCGAGTCGGGCGGTG--GTGCCTATGCCCT 14977 | ||||||||||| || |||| |||| ||| | ||| | | | || | ||||| Sbjct 8728 TTCTGGGCGGCACCCTGACCACCCAG----GCG-GACGGCAAGAGCAGCACCAACGCCCT 8782 Query 14978 GGGGCAGGTCCATAACGAGGTGCGCCATGACCT-ACTGGCTGCGGATGCCCGCCAGCTCG 15036 || | || |||||||| |||||||| || || || | | || ||||| ||||| | Sbjct 8783 AGGCAACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGC-GATGCGGTGCAGCTGG 8841 Query 15037 CCGCCACGCTGAGTCGCGATCTACT 15061 ||| |||||||| || || || || Sbjct 8842 CCGGCACGCTGACCCGTGACCTGCT 8866 >seq1892 Length=4253 Score = 96.9 bits (106), Expect = 8e-16 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 11738 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGCCAG 11797 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 11798 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTATGGCACCGCTCGCCGCTGGAAA 11857 ||||| ||| | || ||||| | ||||| | | || || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 11858 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAGGGCGCAATCGGCGCAGTTGCTGGCC 11917 | | || | | || ||| || |||||||||| | || | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 11918 GGTGGCGGACTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACTCAGTTTCAG 11977 || || || |||||||| | | ||| ||| | |||| ||||| || |||| ||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 11978 GCCACCATGGA 11988 |||| |||| Sbjct 151 ACCACGCTGGA 141 >seq3855 Length=27953 Score = 89.7 bits (98), Expect = 1e-13 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 15917 GCCGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGGAAACGATCTATCAGACCAACATG 15976 ||||| | || || || |||||| | || || |||| ||||| ||| | ||| | Sbjct 15145 GCCGAAGCCGTGCAACTGGGCAGCGCCCGGCGTCTGGCGACGATATATAACGTCAATACC 15086 Query 15977 CAATCGGCCTACATGGCCGGGCGCTATGCCGCCGCATACGA-GGCCAGGGAAACCC---A 16032 | ||||| | ||||| |||||||| || | || ||||| | | || | Sbjct 15085 CGCGTAGCCTATAATGCCGGCCGCTATGCA----CAGATGATGGCCACCGCAGACCTTTA 15030 Query 16033 CCCCTACTGGATGTATGTGGCCGTCATGGACAGCGTCACCCGGCCCAGCCATGCGGCGCT 16092 ||||||||| |||||| |||||| ||| ||| |||||||||| ||||| || || Sbjct 15029 TCCCTACTGGCAGTATGTCGCCGTCGGGGATAGCCGCACCCGGCCCTCGCATGCCGCCCT 14970 Query 16093 ACATGGCAAGGTGTTCCGCTGGGACGACCCGATCTGGC-AACACATCATGCCGCCGAATG 16151 ||||||||||| || || | || |||| |||||| || ||| | ||||| || | Sbjct 14969 GCATGGCAAGGTCTTTCGTTACGATCACCCCTTCTGGCAAAGTCATTA-CCCGCCCAACG 14911 Query 16152 GCTACAACTGCCGGTGCCG 16170 | | |||||||| ||||| Sbjct 14910 GGTTTAACTGCCGTTGCCG 14892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119488769423872