Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq2351 165 8e-36 >seq2351 Length=10305 Score = 165 bits (182), Expect = 8e-36 Identities = 264/377 (70%), Gaps = 4/377 (1%) Strand=Plus/Minus Query 118889 GATGTCATCAAAGACGATCGACGGATC--TGCCAGGATGTTACGGATGATATGGGTGTAT 118946 ||| ||||| || || | | |||||| || || || || |||||||||||||| || Sbjct 4762 GATATCATCGAACACCAGTGCCGGATCGTTGACA--ATATTGCGGATGATATGGGTATAG 4705 Query 118947 GAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTG 119006 || || || ||||| || || || ||||| || |||| ||| ||||||| || | Sbjct 4704 GAACGGGAATGGATGGTTTCTGAAAATGCCCAGGTTTCTATCCAGGTTTCCAACTCTGGG 4645 Query 119007 TCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGG 119066 ||| | | ||| | || | ||||||| | || || || | || ||||| || Sbjct 4644 ATGGAGATCAGCGGTAACAATGCGACGTTCGGGCTGCGTCCTTGAATGGAGTCCAGCAGT 4585 Query 119067 ATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAG 119126 | ||||| ||||| |||||||||||||||||||| || || || || || | ||| Sbjct 4584 GTTTGGTATTTCAGATTGCTGATGAAGATGTGCTTTTCATGTTCTGGTAGCGCCTGATAG 4525 Query 119127 TCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTC 119186 ||||| || || || | ||| | || ||||| ||||||||||| || | || || ||| Sbjct 4524 TCGATGCGATCGCGAGACACATCCACCTCTTCTGGACGCCAGAAAAAGGAGAGCTGTTTC 4465 Query 119187 TCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTC 119246 || |||||||||||||| | | | ||| ||||| || || || | ||||| | | Sbjct 4464 TCTATCAGCTTCTCGAATATTTCATATTTTTGCTGATCGTAACGCGCTACGTTAACGGAC 4405 Query 119247 TCGCCGAGGAACATCGG 119263 | || | ||||||||| Sbjct 4404 TGACCAAAGAACATCGG 4388 Score = 141 bits (156), Expect = 9e-29 Identities = 269/392 (69%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 118379 CAGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACC 118438 ||| || |||||| |||| || | ||||||||| || | ||| | || || | Sbjct 5305 CAGCCCTACCGCTTGCATGCGGATATTGGTGATGTATTCAACGTACTGGCAGAGAATGTC 5246 Query 118439 TTTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTG 118498 |||||||||||| |||||||||||||| ||||||| | |||| ||||||||||| Sbjct 5245 TTTGTTCAGGCCAATCATCGAACCGTCGCGGAACAGGTATTCCGCCCACTCTTTCTCCTG 5186 Query 118499 CACCGATGCGTCGATAAAGCCCTGTCGTGCC--TCTTCGTAGCAATCTTCTGCCACACGT 118556 | | || | ||| | ||||| | || | | ||| |||| || | || Sbjct 5185 CTGTGCAGCCAGCACAAA--CAGGTCGTAGCATTCCTGTTGGCACGCTTCGGCGATTTGT 5128 Query 118557 GCAAA--CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGG 118614 || | | || | | || | ||| |||| |||||||||| ||| || |||| Sbjct 5127 GCCATTTCCGG--ATCGTCCTGGCCGGAACGCATCAGATTCAGCATATGCTGGGTACCGG 5070 Query 118615 ACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTA 118674 || |||| |||||||| || || ||||||| ||||| |||| ||| ||| ||| | Sbjct 5069 TCAGGTGCAGCGCTTCATCGCGGGCGATCAGTTTGATAATTTTGGCGTTGCCCTCCATCA 5010 Query 118675 CGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCA 118734 |||| || | || ||||| ||||||||||| || || || |||||||| ||||||| Sbjct 5009 GTTCGCGTTCGGCAAAGGCGAATGAGCAGGCGAAACTGACATAAAAACGGATGGCTTCCA 4950 Query 118735 GTGCATTGATGTTGTGCAGACACAGATACAGC 118766 | || |||| | | ||| |||||||| ||| Sbjct 4949 GCGCGTTGACGCTCATCAGGCACAGATAAAGC 4918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 292/442 (66%), Gaps = 19/442 (4%) Strand=Plus/Minus Query 120504 GGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGC-CTGTTC 120562 || || || ||||| || ||||||| ||||||||||||||| ||| || || || || Sbjct 3310 GGGTGGGTTGGCAGCGCAATTTCCAGGCACAGGTTGGACTGACGCACTGGTGCGATGGTC 3251 Query 120563 GGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT 120622 || || |||||||| | |||||||| || || || ||||| | ||| |||||||| || Sbjct 3250 -GGTTCAAACGGGCTGTGGGTGTTGCAATGATCGACATGCTGAATGTAGATACGGCCGGT 3192 Query 120623 CTGAGAACGCTCCTGACCAAACACGGAGAAGGCATCTGCCGCCGAGATGGTTTTCTTCGC 120682 | || || || | || ||||| ||| |||| |||| |||||| || Sbjct 3191 AGAGGCGCGTTCTTGCATCATCAGCGAGAACAGATCGACCGCTTTCATGGATTTCTT-GC 3133 Query 120683 CACAGAAG-GATCTGCTTCCAGTTCCTCATAGAGCTGTTGGAATTTCTCTTGGTTAGAGA 120741 | | ||| ||| | || ||| | ||| ||| | || || | | || Sbjct 3132 GGATGCTGTCGTCTTTTTCATACTGCTGATATAAGCGTTCGAACTCATCCTGATCGGCGA 3073 Query 120742 AGAAATAC-TCATACAGCTTACCTTTTGCCACGTTA---GGATGGAACAATGTGATGTTC 120797 | |||| | |||||||| || | |||| | || ||||| ||||| ||| Sbjct 3072 A-AAATGCGTCATACAG---GCC---GGGTACGTCAGAGGGGCTGAACAGGGTGAT-TTC 3021 Query 120798 TTACCCTGCTG--GAGGCGAGAGTACAGCATTTTGTTCAACTGAAGTCCGTAGTCCACAT 120855 || ||| || ||||| |||| || ||||||||||| | ||||| || | | Sbjct 3020 TTGTCCT-TTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCACGCCGTAATCGAGGT 2962 Query 120856 GGCGAGCACGAGTGCTCTCAGTACCACGGTTGTTCTTCAGCACAATCAGGCTTTCAAAAT 120915 | || | || ||| || |||||||||||||||||||| | ||||||||| | | Sbjct 2961 GACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTT 2902 Query 120916 CCCAGTGCCACATCGGATAAAA 120937 || ||||||| ||| ||||| Sbjct 2901 CCAGATGCCACAGCGGGTAAAA 2880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477166731356160