Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq3081 300 4e-77 seq3282 159 9e-35 seq3859 134 4e-27 seq2452 134 4e-27 seq3357 113 1e-20 seq2649 113 1e-20 seq2347 113 1e-20 >seq3081 Length=2121 Score = 300 bits (332), Expect = 4e-77 Identities = 501/717 (70%), Gaps = 18/717 (3%) Strand=Plus/Minus Query 1420 CCAAAATCACGGATTTCTGGATCTGATTGGGCCGATAAGTACCGTTATGTTGCCCCCGGA 1479 || ||||||||| | | | ||||| |||||||| || || |||||||| || || ||| Sbjct 912 CCTAAATCACGGCTAACCGTTTCTGAGTGGGCCGACAAATATCGTTATGTGGCTCCGGGA 853 Query 1480 ACATCGCCAGAGCCCGGACCGTGGCGAACAAGTCGCGTCCCTTACCTCAAAGAGCCTATG 1539 || || || ||||| || |||||||| |||||||||||||| || || || || ||| Sbjct 852 ACGTCTCCTGAGCCGGGGCCGTGGCGCACAAGTCGCGTCCCCTATCTGCGTGAACCGATG 793 Query 1540 GATTGCTCTACCGATGGCGAAACCGAAGTCACGGTAATGATG---TGCTCATCTCAGATC 1596 || | |||| || |||||| ||||| || ||| ||| || |||||| Sbjct 792 AATGTCATCGGTGATGCTGATACCGAA---ACGGTCATCATGCAATGCAGCTCGCAGATC 736 Query 1597 GGCAAATCTGAGTATGTT-CTGAATATCATGGGCTACTACGCCGACCAAGAGCCAGCACC 1655 || || || ||| ||| || || | ||||| || | || || || || || ||||| Sbjct 735 GGTAAGTCAGAG-ATGCAGCTCAACGTGATGGGGTATTTTGCGGATCAGGAACCGGCACC 677 Query 1656 GCAGTTAATGCTTCAGCCAACGGTAGAAGCGGCGGAGGCATTCTCAAAAGAGCGTATCGA 1715 ||||| ||| || | || || || |||||||| ||||| || |||||||||||||| || Sbjct 676 ACAGTTGATGATTTACCCCACCGTTGAAGCGGCTGAGGCGTTTTCAAAAGAGCGTATAGA 617 Query 1716 TCCTACCTTCCGATATTCTTCAGGCTTAAAAAACAAGCTTGAAGAAGGTCAAGACGGTCG 1775 |||||| ||| ||||| | || |||||||||| ||| |||| ||| |||| || || Sbjct 616 TCCTACGTTCAAGTATTCGCCCGGTTTAAAAAACACGCTCCAAGAGGGTAAAGAAGGCCG 557 Query 1776 CGGATCAAGCCGAA--AGTCATCAACAACGATCCGAATGAAGCACTACCCCGGCGGTTAT 1833 || | | |||| | || ||||| || || ||||||||||| | || || ||| Sbjct 556 AGGCGC--GGCGAAGAAATCCAGTACAACAATTCGTATGAAGCACTATGCGGGGGGCTAT 499 Query 1834 CTGGCACTAGTGGGCGCAAACTCGCCCGCTGGTCTTGCCTCTCGCCCGATCAGGATAATA 1893 | || || || ||||| ||||| ||| | || |||||||| ||||| || | || | Sbjct 498 ATTGCTCTGGTTGGCGCTAACTCCCCCTCCGGCCTTGCCTCGCGCCCAATTCGAATTCTG 439 Query 1894 CTGGCCGATGAGGTGGACCGCTACGGCTTCACAAAAGAGGGTGATCCGCTCAAGCTTGCC 1953 || || ||||| | ||||||||||| |||| | || || |||||||| ||| | | Sbjct 438 CTTGCAGATGAAATCGACCGCTACGGTATCACGCAGGAAGGCGATCCGCTGAAGTTGGGG 379 Query 1954 ATTCAGCGTACAACCAACTTTCACAACAGGAAGATTTGCCTTGTATCAACGCCAACCATT 2013 |||||||| ||||| ||||| |||||||| || | | || || | || || || Sbjct 378 ATTCAGCGAACAACAAACTTCCACAACAGAAAAAAAGTGTTCGTTTCTA---CACCCGTT 322 Query 2014 TCGGGCCA---CAGCAAGATAGAAGAGTGGTGGCTGAAATCCGATCAGCGTTATTTCCAC 2070 | | | |||||| ||| | | |||| | | || ||||||||||||| ||| Sbjct 321 TATGAAGAAACCAGCAACATACATAAATGGTTTAAGCAGTCAGATCAGCGTTATTACCAT 262 Query 2071 GTCCATTGTCCTCATTGCGGAGAGCTTCAGGTTCTAAAATGGGGACAGGTCAAGTGG 2127 || | ||||| || || | | ||||| || |||||| ||||| || ||| Sbjct 261 GTTCCATGTCCATGCTGTGGTGCCATGCAGGTGCTGAAATGGTCGCAGGTTAAATGG 205 Score = 100 bits (110), Expect = 8e-17 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 181 TGCGCCATACGTGAAAAATGCGCGCACTCACTCTGAAGAGCAAATTTCGCAAATTGTCGA 240 ||||| |||| ||||||| |||| || || || || ||||| || ||| | || | Sbjct 2061 TGCGC--TACGCGAAAAATTCGCGAACGCATTCAGACGAGCAGGTTGAGCAGCTGGTTAA 2004 Query 241 GAGCATCCGCGAGTTTGGTTTTACCAATCCGATTTTGATTGATCAGCACAATGAGTTGAT 300 ||||| || ||||||||||||||||||||| | |||||||| || | || | |||| Sbjct 2003 CAGCATTCGGGAGTTTGGTTTTACCAATCCGGTGCTGATTGATGAGAAAAACACGCTGAT 1944 Query 301 CGCTGGTCATGGTCGTTTGGAAGCTGC 327 ||| || ||||| ||| ||| |||||| Sbjct 1943 CGCCGGGCATGGACGTCTGGCAGCTGC 1917 >seq3282 Length=7904 Score = 159 bits (176), Expect = 9e-35 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 38194 ATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAG 38253 ||||| |||||||| || || || ||||| | | || | || || ||||| || || Sbjct 7255 ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGGCAAGACCCGGAA 7314 Query 38254 GTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTT 38313 || || ||||| || | ||| || || || || ||| | || | || ||||| || Sbjct 7315 GTCCGTTATCTGCCGAACGGTGGTGCCGTTGCTAACCTGACTCTGGCCACGTCAGATACC 7374 Query 38314 TGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTG 38373 ||||| || ||||| ||||| ||| |||||| ||||| |||||||| || || || Sbjct 7375 TGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACAGAATGGCACCGCGTCACGCTG 7434 Query 38374 TTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATT 38433 | || |||||||||||||| ||||| |||||||| || ||||| || || || ||| || Sbjct 7435 TACGGAAAGCTGGCTGAAGTGGCTGGAGAATACCTGCGCAAAGGCTCACAGGTGTATGTT 7494 Query 38434 GAAGGCCAGCTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACAC 38489 ||||| || || || || |||| |||||| ||||| ||||| || || || Sbjct 7495 GAAGGTCAACTGCGCACGCGTAAATGGCAGGATCAGAGCGGGCAGGATCGTTATAC 7550 >seq3859 Length=3460 Score = 134 bits (148), Expect = 4e-27 Identities = 229/331 (69%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 6119 CGGATCAATAGTTACGGTGGCGAAGTGTTTACCGCTCAAGCTATTTACTCACTGCTGAAA 6178 || || || || || || ||| || ||||||||||| || || || ||||||| Sbjct 384 CGAATTAACAGCTATGGCGGCTCGGTCTTTACCGCTCAGGCGATCCTTTCTTCGCTGAAA 443 Query 6179 AGCCATCCTGCAAGCATCAGTGTCTTTATTGATGGCATAGCAGCAAGTGCCGCAACCATT 6238 || || || ||||| ||| |||| ||| |||||||| || || ||||||||||| Sbjct 444 AGACACCCGGCAAGTGTCACCGTCTATATCGATGGCATTGCCGCGTCGGCCGCAACCATA 503 Query 6239 ATCGCGATGGCTGGCGATAAGATCATCATGCCATCCAACGCCATGATGATGATCCACAAT 6298 || ||||||||||| ||||| ||||| || || | || ||||||||||||||||| || Sbjct 504 ATTGCGATGGCTGGGGATAAAATCATTATCCCTGCTAATGCCATGATGATGATCCATAAC 563 Query 6299 CCATTGAC---TGGCGTTTGGGGTAACTCTTCAGACCTTCGCGAAGTAGCCAATCTTCTT 6355 |||| ||| || || | ||| | | ||| | || || || || | | | Sbjct 564 CCATGGACGTTTGCCGCT---GGTGATGCCGGAGAGTTACGGGATGTTGCTGAAATGATG 620 Query 6356 GATAAAGTTCGCGAAACCCTGCTTGCAACTTATCGAGCAAAAACAGGTTTGGACGATAAA 6415 |||||||| | | | | | || || | ||||| | |||||| || | | ||| | Sbjct 621 GATAAAGTCAGAAATAGCATTCTGGCTGCATATCGCGAAAAAACGGGACTTGCTGATGAG 680 Query 6416 AAGCTTATCGAGTTGCTGGATAACGAAACCT 6446 || ||||| ||| | ||||| ||||||||| Sbjct 681 AAACTTATTGAGCTAATGGATGACGAAACCT 711 >seq2452 Length=2364 Score = 134 bits (148), Expect = 4e-27 Identities = 203/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 38203 AGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAGGTGCGCTAT 38262 ||||| |||||||| ||||| | | || ||||| || ||||| || | |||||||| Sbjct 1866 AGAGGCGTAAACAAAGTGATTCTCGTGGGACACCTCGGGCAAGACCCCAAAGTGCGCTAC 1925 Query 38263 CTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGGGAT 38322 ||| ||||| | |||||||||||| | || |||| || ||||| ||| | || Sbjct 1926 ACACCGAGCGGATGGGCAGTGGCAAACCTGACTGTAGCCACTTCTGATTCATGGAGAGAC 1985 Query 38323 AAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAG 38382 ||||| || ||| ||| || ||| || || ||||| || || || ||| || ||| Sbjct 1986 AAGCAGACTGGAGAGCAGAAGGAGCGCACGGAATGGCATCGCGTCACGCTGTACGGAAAG 2045 Query 38383 CTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAG 38442 |||| || || ||||| ||||| || || || || || || || ||||| || ||||| Sbjct 2046 TTGGCAGAGGTGGCTGGTGAATATCTACGCAAGGGTTCGCAGGTATATATCGAGGGCCAA 2105 Query 38443 CTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACACAA 38491 | || | |||||||| || || || || ||| ||||||||| Sbjct 2106 TTGCGCACAAGGAAGTGGCAAGACCAGTCAGGGCAAGACAGATACACAA 2154 >seq3357 Length=2553 Score = 113 bits (124), Expect = 1e-20 Identities = 294/444 (66%), Gaps = 7/444 (2%) Strand=Plus/Plus Query 4385 AGGGATCTATGAATATTCTAGACAAGTACATTGCATGGAAAGATCCAGAGCGAGCGTTGC 4444 ||||||||||||||||||| || ||| ||||| |||| | ||||| | Sbjct 1214 AGGGATCTATGAATATTCTGGATAAGGTTATTGCTCCATTCTTTCCACAAAGAGCGCTAA 1273 Query 4445 GTCGAGAGGTTGCGCGAAAAAAGCTTGAGG----TAATGAACTCCGGTTACTCTCGCCAC 4500 | || | || ||| | | ||||| ||| |||| || | || || || || Sbjct 1274 GCCGGGCTGTGGCGAGGAGGAAGCTCCAGGCGATTAAT-AATTTAGGCTATGACCGTCAT 1332 Query 4501 GGCGCAAGCAAGCAGAAAAAATCACTCCTTGGCTGGATCAGTAAAGGCGCATCGCCAGAC 4560 || || || | || ||||||||| | | ||| ||| | ||| | | ||||| || Sbjct 1333 GGAGCCAGTACCCATAAAAAATCAATGCGTGGTTGGTTTAGTCGGGCGGGTTCGCCGGAT 1392 Query 4561 GAAGATATTGTCGAGAACGC-GCCAACACTTCGCGACCGTTCACGCGATCTGTTCATGGG 4619 || |||||||| || ||| | | | | | ||||| ||||| || ||||| || ||||| Sbjct 1393 GACGATATTGTTAAGC-CGCTGGCTATATTACGCGAACGTTCGCGTGATCTTTTTATGGG 1451 Query 4620 TACGCCAATTGCAACGGGCGCACTTAAAACCATTCGAACCAACGTTGTCGGCTCTGGCCT 4679 | || | || |||| || | |||||||| ||||||| ||||| || || || | Sbjct 1452 GAATCCCCTGGCGGCGGGTGCCATAAAAACCATCAGAACCAATGTTGTTGGTTCGGGGTT 1511 Query 4680 TCGCCTAAATTCCCACATCGATTACAAATACCTTGGGCTAACCAAAGAGCAAGCGGATGA 4739 || ||| || |||||||| | | ||||| | | || ||||| | Sbjct 1512 AAAGCTGAATGCCAACATCGATGCTGAGTTTCTTGGATTGTCGCCGGAAGAAGCGAGGCA 1571 Query 4740 GTGGGAGCAGAACACAGAGCGCGAGTTTCGTCTATGGGGTGATACTCAGCATTGTGATGC 4799 |||||| | ||||| || || |||||||| || |||| |||| | | | |||||||| Sbjct 1572 GTGGGAAAAAAACACTGAACGTGAGTTTCGGCTGTGGGCTGATTCGGTGAACTGTGATGC 1631 Query 4800 GGCGCGCATGTGTACTTTTGGCCA 4823 | ||||||||||| |||||||| Sbjct 1632 ATCCCGCATGTGTACGTTTGGCCA 1655 >seq2649 Length=2531 Score = 113 bits (124), Expect = 1e-20 Identities = 294/444 (66%), Gaps = 7/444 (2%) Strand=Plus/Minus Query 4385 AGGGATCTATGAATATTCTAGACAAGTACATTGCATGGAAAGATCCAGAGCGAGCGTTGC 4444 ||||||||||||||||||| || ||| ||||| |||| | ||||| | Sbjct 1340 AGGGATCTATGAATATTCTGGATAAGGTTATTGCTCCATTCTTTCCACAAAGAGCGCTAA 1281 Query 4445 GTCGAGAGGTTGCGCGAAAAAAGCTTGAGG----TAATGAACTCCGGTTACTCTCGCCAC 4500 | || | || ||| | | ||||| ||| |||| || | || || || || Sbjct 1280 GCCGGGCTGTGGCGAGGAGGAAGCTCCAGGCGATTAAT-AATTTAGGCTATGACCGTCAT 1222 Query 4501 GGCGCAAGCAAGCAGAAAAAATCACTCCTTGGCTGGATCAGTAAAGGCGCATCGCCAGAC 4560 || || || | || ||||||||| | | ||| ||| | ||| | | ||||| || Sbjct 1221 GGAGCCAGTACCCATAAAAAATCAATGCGTGGTTGGTTTAGTCGGGCGGGTTCGCCGGAT 1162 Query 4561 GAAGATATTGTCGAGAACGC-GCCAACACTTCGCGACCGTTCACGCGATCTGTTCATGGG 4619 || |||||||| || ||| | | | | | ||||| ||||| || ||||| || ||||| Sbjct 1161 GACGATATTGTTAAGC-CGCTGGCTATATTACGCGAACGTTCGCGTGATCTTTTTATGGG 1103 Query 4620 TACGCCAATTGCAACGGGCGCACTTAAAACCATTCGAACCAACGTTGTCGGCTCTGGCCT 4679 | || | || |||| || | |||||||| ||||||| ||||| || || || | Sbjct 1102 GAATCCCCTGGCGGCGGGTGCCATAAAAACCATCAGAACCAATGTTGTTGGTTCGGGGTT 1043 Query 4680 TCGCCTAAATTCCCACATCGATTACAAATACCTTGGGCTAACCAAAGAGCAAGCGGATGA 4739 || ||| || |||||||| | | ||||| | | || ||||| | Sbjct 1042 AAAGCTGAATGCCAACATCGATGCTGAGTTTCTTGGATTGTCGCCGGAAGAAGCGAGGCA 983 Query 4740 GTGGGAGCAGAACACAGAGCGCGAGTTTCGTCTATGGGGTGATACTCAGCATTGTGATGC 4799 |||||| | ||||| || || |||||||| || |||| |||| | | | |||||||| Sbjct 982 GTGGGAAAAAAACACTGAACGTGAGTTTCGGCTGTGGGCTGATTCGGTGAACTGTGATGC 923 Query 4800 GGCGCGCATGTGTACTTTTGGCCA 4823 | ||||||||||| |||||||| Sbjct 922 ATCCCGCATGTGTACGTTTGGCCA 899 >seq2347 Length=2531 Score = 113 bits (124), Expect = 1e-20 Identities = 294/444 (66%), Gaps = 7/444 (2%) Strand=Plus/Plus Query 4385 AGGGATCTATGAATATTCTAGACAAGTACATTGCATGGAAAGATCCAGAGCGAGCGTTGC 4444 ||||||||||||||||||| || ||| ||||| |||| | ||||| | Sbjct 1192 AGGGATCTATGAATATTCTGGATAAGGTTATTGCTCCATTCTTTCCACAAAGAGCGCTAA 1251 Query 4445 GTCGAGAGGTTGCGCGAAAAAAGCTTGAGG----TAATGAACTCCGGTTACTCTCGCCAC 4500 | || | || ||| | | ||||| ||| |||| || | || || || || Sbjct 1252 GCCGGGCTGTGGCGAGGAGGAAGCTCCAGGCGATTAAT-AATTTAGGCTATGACCGTCAT 1310 Query 4501 GGCGCAAGCAAGCAGAAAAAATCACTCCTTGGCTGGATCAGTAAAGGCGCATCGCCAGAC 4560 || || || | || ||||||||| | | ||| ||| | ||| | | ||||| || Sbjct 1311 GGAGCCAGTACCCATAAAAAATCAATGCGTGGTTGGTTTAGTCGGGCGGGTTCGCCGGAT 1370 Query 4561 GAAGATATTGTCGAGAACGC-GCCAACACTTCGCGACCGTTCACGCGATCTGTTCATGGG 4619 || |||||||| || ||| | | | | | ||||| ||||| || ||||| || ||||| Sbjct 1371 GACGATATTGTTAAGC-CGCTGGCTATATTACGCGAACGTTCGCGTGATCTTTTTATGGG 1429 Query 4620 TACGCCAATTGCAACGGGCGCACTTAAAACCATTCGAACCAACGTTGTCGGCTCTGGCCT 4679 | || | || |||| || | |||||||| ||||||| ||||| || || || | Sbjct 1430 GAATCCCCTGGCGGCGGGTGCCATAAAAACCATCAGAACCAATGTTGTTGGTTCGGGGTT 1489 Query 4680 TCGCCTAAATTCCCACATCGATTACAAATACCTTGGGCTAACCAAAGAGCAAGCGGATGA 4739 || ||| || |||||||| | | ||||| | | || ||||| | Sbjct 1490 AAAGCTGAATGCCAACATCGATGCTGAGTTTCTTGGATTGTCGCCGGAAGAAGCGAGGCA 1549 Query 4740 GTGGGAGCAGAACACAGAGCGCGAGTTTCGTCTATGGGGTGATACTCAGCATTGTGATGC 4799 |||||| | ||||| || || |||||||| || |||| |||| | | | |||||||| Sbjct 1550 GTGGGAAAAAAACACTGAACGTGAGTTTCGGCTGTGGGCTGATTCGGTGAACTGTGATGC 1609 Query 4800 GGCGCGCATGTGTACTTTTGGCCA 4823 | ||||||||||| |||||||| Sbjct 1610 ATCCCGCATGTGTACGTTTGGCCA 1633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132892937789696