Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq3855 134 3e-27 seq3688 129 1e-25 seq1892 111 4e-20 >seq3855 Length=27953 Score = 134 bits (148), Expect = 3e-27 Identities = 230/330 (70%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 20459 AACACCTATGGCTGGCTGGGGCAGTTCCCCAAGCTGCGCGAGTGGATCGGTCAGCGTGTC 20518 || ||||| ||||||||||||||||| ||| | | || |||||| |||| ||| Sbjct 12038 AATACCTACGGCTGGCTGGGGCAGTTTCCCGCGTTCCGGGAGTGGGTCGGCTCGCGCAGT 11979 Query 20519 ATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACAAGCTCTTCGAATCGACCGTG 20578 ||| || | ||| || | | |||||| |||| ||||||| || ||| || || Sbjct 11978 ATCCAGCAGATGAAGGTCTATGGCTACGCCATCAACAACAAGACCTATGAAGGCACGGTC 11919 Query 20579 GGCGTGAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTCATGCAG 20638 | | | | || || | ||||| ||||| ||||||| || | ||||| | ||| Sbjct 11918 GCCATTACCCGCGATGATTTTGAGGATGACAATCTCGGCGCGTATAGCCCGCTGTTTCAG 11859 Query 20639 GAAATGGGGCGCGCTGCCGGCGCGCATCCCGACGAGCTGGTCTT---CGCCCTGCTCAAG 20695 |||||||| ||||| |||| ||| || || || |||||||| || |||| ||| | Sbjct 11858 GAAATGGGCCGCGCCGCCGCCGCACAACCGGATGAGCTGGTGTTTACCGCCTTGCGC--- 11802 Query 20696 GCCGGCAACGCCAATCTCTGCTACGACGGTCAAAAC-TTCTTCGACACCGATCACCCGGT 20754 | |||||| | |||||||||||| |||| | || || || | ||| || ||||| Sbjct 11801 GACGGCAATAAAACCGACTGCTACGACGG-CAAACCTTTTTTTGATAGCGAACATCCGGT 11743 Query 20755 CTATCCGAACGTGGATGGCACCGGCACGGC 20784 ||||| || || || |||| |||||| || Sbjct 11742 GTATCCCAAGGTCGACGGCAGCGGCACCGC 11713 >seq3688 Length=22785 Score = 129 bits (142), Expect = 1e-25 Identities = 594/920 (65%), Gaps = 43/920 (5%) Strand=Plus/Plus Query 14666 CATCTTGATCGAGGCCGAGCAGGGTCAACTCCAGGCTCAGGCCGAGCTGTTCATGGACAT 14725 |||| ||| ||||||||||||||| || || | |||||| || ||||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 14726 GGAGGAACGCGACGCCCACCTATTCGCAGAAATGAGCAAGCGCAAGCGCGCTGTCCTCGG 14785 |||||| ||||||| |||||| || || || |||||||||||| || | || | Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGCCGCCGTTCGGTGATGCC 8089 Query 14786 CCTGGACTGGACCATCGAGCCGCCACGCAACGCCTCGGCCGCA-GAGAAGGCCGACGCGG 14844 || |||| ||| | |||||| || | || | |||| || ||||| |||| Sbjct 8090 GCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATG-CGCAGGAAAAGGCGATGGCGG 8148 Query 14845 AGTATCTCCACGAGC---TGCTGCTC-GACCTGGAGGGCATTGAAGACCTCATGCTCGA- 14899 | | || ||| | || | || |||||| || ||||| || || |||| Sbjct 8149 A----CGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 14900 TTGCATGGATGGCGTCGGCCACGGCTATAGCGCTATCGAGCTGGACTGGTCCCTCCAGGG 14959 |||| |||| | | | |||||||||| | ||| | || ||| ||| | || Sbjct 8205 TTGC-TGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAAACAGGCGGA 8263 Query 14960 ACGGGAGTGGTTGCCGCAGGCCTTCGACCACCGGCCGCAAAGCTGGTTTCA-ACTG-AAC 15017 | ||| |||| |||||| || | || |||||| ||||||| || || | ||| Sbjct 8264 AAACATCTGGCTGCCCTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCGCAAC 8323 Query 15018 CCGGACGACCAGGACGAGCTGCGCTTGCGCGATAACAGCATCGCGGGCGAGGTACTCCAG 15077 || | |||| ||| | ||| || || |||| | | || | | || | Sbjct 8324 CC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCTTAAT 8381 Query 15078 CCGTTCGGCTGGATCATGCACAAGCCGCGTTCGCGC----TCGGGATACGTGGCGCGTAG 15133 || || |||||| | |||| ||| || || || | || || || Sbjct 8382 CCCTTTGGCTGGCTGCTGCA----TCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAAG 8437 Query 15134 CGGGCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCAAG--CACTACTCCACGGCCGAC 15191 ||| |||||||| || |||| ||| | |||||||||||| | | || | || ||| Sbjct 8438 CGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCG--TGAC 8495 Query 15192 CTGGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTA-CCCGCCCGG 15250 ||||||||| | || ||||||||||| ||||||| ||| | || | || ||| | || Sbjct 8496 CTGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGGG 8555 Query 15251 CACGCC--CGACGAAGAGAAGGTGACCCTGCTGCGGGCCGTGACCGGCCTCGGCCATGCC 15308 ||| || ||||| ||| | |||||| |||| || || ||| || ||| | Sbjct 8556 ---GCCAGTGAAGAAGAAAAGAACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAAC 8612 Query 15309 GCAGCAGGCATCATCCCCGAGAGTATGTCCATCGAGTTCCAGGAAGCGTCGAAAGGCTCG 15368 || | ||||| |||| ||| | | | ||| || || || | | || | Sbjct 8613 GCCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGGGCAG 8672 Query 15369 GCCGAGCCGTTCATGGCCATGATGCGCTGGTGCGATGACTCAATGTCGAAGGCCATCCTG 15428 | ||| |||||| | ||||||| |||||||| | | ||| |||| ||| ||| Sbjct 8673 GTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCTG 8732 Query 15429 GGCGGCACGCTCACCAGCCAGACCAGCGAGTCGGGCGGTG--GTGCCTATGCCCTGGGGC 15486 |||||||| || |||| |||| ||| | ||| | | | || | ||||| || Sbjct 8733 GGCGGCACCCTGACCACCCAG----GCG-GACGGCAAGAGCAGCACCAACGCCCTAGGCA 8787 Query 15487 AGGTCCATAACGAGGTGCGCCATGACCT-TCTGGCGGCGGATGCCCGACAGCTCGCCGCC 15545 | || |||||||| |||||||| || || | | | || ||||| ||||| |||| | Sbjct 8788 ACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGC-GATGCGGTGCAGCTGGCCGGC 8846 Query 15546 ACGCTGAGCCGAGACCTACT 15565 ||||||| ||| ||||| || Sbjct 8847 ACGCTGACCCGTGACCTGCT 8866 Score = 129 bits (142), Expect = 1e-25 Identities = 166/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 16450 CCGGCTGGAAACGATCTACCAGACCAACGTGCAGTCGGCCTACATGGCCGGGCGCTAT-- 16507 ||||||||| || || | | ||||| || || ||||| ||||||||||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 16508 GCCGCCGCATACGAGGCCAGGGAAACTCACCCTTACTGGATGTATGTGGCCGTCATGGAC 16567 || || || |||| | || | || |||||| ||||||||| || |||||| Sbjct 9774 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 16568 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 16627 ||| |||||| ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 16628 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCG 16674 |||| | | | | |||||||| |||||||||||||| ||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCG 9938 >seq1892 Length=4253 Score = 111 bits (122), Expect = 4e-20 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 12242 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGCCAG 12301 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12302 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGGAAA 12361 ||||| ||| | || ||||| | ||||| | | ||| || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 12362 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCACAATCGGCGCAGTTGCTGGCC 12421 | | || | | || ||| || |||||||||||| | | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 12422 GGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTCCAG 12481 || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 12482 GCCACCATGGA 12492 |||| |||| Sbjct 151 ACCACGCTGGA 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117754451148800