Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq3532 183 3e-41 seq3176 143 3e-29 seq2351 104 2e-17 >seq3532 Length=11862 Score = 183 bits (202), Expect = 3e-41 Identities = 151/184 (82%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 61277 ATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAG 61336 |||| || || ||||| || ||||| | || ||||| || || ||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 61337 AGTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61396 |||| || || |||||||| || || ||||||||||||| |||||| ||||||||||| | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 61397 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61456 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 61457 CTTC 61460 |||| Sbjct 11329 CTTC 11332 >seq3176 Length=18404 Score = 143 bits (158), Expect = 3e-29 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 61287 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCG 61346 || ||| || ||||| | |||||||| |||| ||||| ||||| ||||| ||||| Sbjct 6324 CTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCG 6383 Query 61347 AACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 61406 || ||||| || || ||||||||||||| |||||||||||||||||| || | | || Sbjct 6384 CACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGC 6443 Query 61407 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 ||| ||| ||||||| || ||||| ||||||||||||||||||||||| || Sbjct 6444 ATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGAT 6500 >seq2351 Length=10305 Score = 104 bits (114), Expect = 2e-17 Identities = 285/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Minus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 ||||| || | || || | ||||| | ||||| || ||| || ||||| || | Sbjct 2974 CCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGC 2915 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 ||| | || ||||| | ||||||| ||| ||| || || || || |||||||| | | Sbjct 2914 AGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACA 2855 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 || || || || || ||||| ||||| || ||||||||||| |||| |||||| || Sbjct 2854 CCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAAGGAATACAGCCA 2795 Query 142083 GTATGTCGAA--CTTCACCCATACCG---ATCTTAGAACCTTCTGCACGAAGCATGCCAA 142137 ||||| ||| ||||||| |||| ||| ||| ||||||| || Sbjct 2794 GTATG--GAATGCTTCACC---ACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGG 2740 Query 142138 CGTTGATACCGATACCAGCTCGTTTAGAAATATATTCGATAATTGATGCTGAAGTTTTGT 142197 |||| || |||||||| || || | |||| |||| | || | || || || Sbjct 2739 CGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAGGTGGCGT 2680 Query 142198 TAATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTCG 142257 |||| || | | || ||| ||||| | || || |||||| || || | Sbjct 2679 TAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTG 2620 Query 142258 GAGTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAA-CTTGATGAGTAGAAACGGCA 142316 | ||||| | || | ||| || || || |||||||||| ||||| | ||||||| || Sbjct 2619 GGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTTGAAG-GTAGAAATCGCG 2561 Query 142317 TCATAAAAACG 142327 ||||| || || Sbjct 2560 TCATAGAAGCG 2550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535263049635840