Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq2750 140 8e-29 seq3842 93.3 1e-14 seq2614 93.3 1e-14 >seq2750 Length=8699 Score = 140 bits (154), Expect = 8e-29 Identities = 290/429 (68%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 37062 TGGCAAGCCTTCGGCGCGAAGGGCTTGGTGGCGCTCGCCTTTTGGTTCGGGAGCCTATTC 37121 |||| || || |||| ||||| | | ||||| || || ||||| |||| || || Sbjct 2446 TGGCGGGCGTTTGGCGTCAAGGGTTACATTGCGCTGGCTTTCTGGTTGGGGACGCTGTTT 2387 Query 37122 GCGGAGCAGATCCGCCAGTCCCACAAGAGCTATCCATTCCTGGAGCTGGTCGGCGAGCCT 37181 || || || |||||| | || || || | ||| ||||| ||| ||||||| || || Sbjct 2386 GCCGAACAAATCCGCGCGGTACAGAAAAGTTTTCCTTTCCTTGAGGTGGTCGGGGAACCC 2327 Query 37182 GGGGCCGGTAAGACTACGCTGATTGAATTTCTCTGGAAGCTGTGCGGCCGACGCGATTAC 37241 || |||| || | ||| ||| | |||||||||||| ||| ||||||||| |||||| Sbjct 2326 GGTTCCGGCAAAAGTACCCTGCTGGAATTTCTCTGGCGACTGAGCGGCCGACCGGATTAC 2267 Query 37242 GAGGGCTTCGACCCCAGCAAGTCGTCCCTGGCGGCGCGCGCGCGGAACTTCGCGCAGGTG 37301 ||||| || || || |||||| ||| | || || || || ||||| || ||||| Sbjct 2266 GAGGGGTTTGATCCGTCCAAGTCTACCCCCGTCGCCCGAGCCCGTAACTTTGCTCAGGTA 2207 Query 37302 TCCAACCTTCCGGTGGTGCTGATCGAGGCAGACCGGGGCGAGGAGGGGGCCAAGCAGCGC 37361 ||| | |||||| ||||| || | || || | ||| ||||||| || Sbjct 2206 GGTAACTTGCCGGTGTGTCTGATTGAAGGGGATCGCACCTTGGACAATGCCAAGCTACGG 2147 Query 37362 GGCTTCGACTGGGACGAACTGAAGACGGCCTACAACGGCCGCAGCACCCGCGCACGTGGC 37421 | || || ||||| |||||||| | || ||||| || | | ||||| || | Sbjct 2146 GCGTTTGATTGGGATGAACTGAAATCCCTGTATAACGGGCGATCCCCACGCGC-GGTAGG 2088 Query 37422 GTCAAGAATG-GCGGGAACGAAACCTACGAACCCCCTTTCAGGGGCGCCATCGTCATCAG 37480 | || || | | |||||||| ||||| || || |||| ||| || || |||| Sbjct 2087 GATAAAAACGAACAACAACGAAACTTACGAGCCGCCGTTCAAGGGGGCGATTATCATTGC 2028 Query 37481 CCAGAACGC 37489 |||||||| Sbjct 2027 GCAGAACGC 2019 >seq3842 Length=22882 Score = 93.3 bits (102), Expect = 1e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 7752 GGCTTCACCTCGTTGCGCGCGAACACCAGGGCGGCCTTCTCCACGTCGCCGAATCCGCCG 7811 ||| ||| |||||| || |||||| | ||||| ||||| ||||| |||||| |||| Sbjct 10432 GGCATCAGTTCGTTGATGGCAAACACCCGCGCGGCTTTCTCAACGTCACCGAATGAGCCG 10491 Query 7812 GTGTTGTTCGGGATGATGCCCATGAGCTGCGGCGGCACGCGGTGCGCGGCGAGTTGGTCG 7871 | | ||| ||| ||||| || || |||||||| ||||||||||| || ||| Sbjct 10492 TCGCCCTCCGGCATGGCCCCCATCAGTTGTGGCGGCACACGGTGCGCGGCAAGGATATCG 10551 Query 7872 TCGCGCGTGACGTTTTTGACGTTCCAGAACTCGTCCTTCGC 7912 || || || || ||||| ||| ||||||| ||||| || Sbjct 10552 TCACGGGTAACCGATTTGATATTCAAGAACTCATCCTTGGC 10592 >seq2614 Length=3563 Score = 93.3 bits (102), Expect = 1e-14 Identities = 213/321 (66%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 28388 CGCGCCGTGGCGGTACTGGGCCGGGTGCTGCTGATGAACCCGATTGGCCTCCTGGTGACG 28447 || |||||| | | |||| |||| ||| || | || || ||||| || ||| | || Sbjct 3032 CGTGCCGTGCTGTTTATGGGTCGGGCACTGATGCTTAATCCCATTGGGCTGCTGATCACC 2973 Query 28448 GCAATTGCGGTCGCGGCCTACCTGATCTACCGGTACTGGTCTCCGATCAGCGAGTTCTTC 28507 | ||||| |||| || | |||||| || || |||||| || || |||| | ||| Sbjct 2972 GGTATTGCTGTCGGCGCTTTCCTGATTTATCGCTACTGGGGGCCAATTAGCGCCTGGTTC 2913 Query 28508 TCGGGGCTGTGGCAGCAGGTGAAGACGGCGTTCGACGGCGGCATCGCTGGCGTGTCCGCG 28567 | | ||| | | | || |||||| ||||||||||| ||| || | ||| Sbjct 2912 AAAGCCCGCTGGGCGGATATCAAACAGGCGTTTTCCGGCGGCATCGGTGGTGTCGCAGCG 2853 Query 28568 CTGATCCTGAACTGGTCGCCGGCTGGCCTGTTCTACGCCGCACTCGCGCCGGTGTTGCAG 28627 ||||| | ||||||||||||| || |||||||| || ||||| || ||| Sbjct 2852 CTGATTATCAACTGGTCGCCGGTGGGGCTGTTCTATAAGGCGTTCGCGGGCGTCATGCGC 2793 Query 28628 TGGTTCGGGTTCGACGTGCCGGCCAAGTTCACCGAGTTCGGCGCCAACATCGTGCAGGGC 28687 | ||| | || | || ||||| || ||||| ||||| |||| | | |||| Sbjct 2792 TATTTCACTATTGAGTTACCTGCCAATTTTACCGATTTCGGTCGCAACCTGATTGAGGGA 2733 Query 28688 CTGGCCAACGGCATCCGCAGC 28708 |||| || ||| || |||||| Sbjct 2732 CTGGTCAGCGGTATTCGCAGC 2712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127878774068224