Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq14 91.5 1e-13 >seq10 Length=2352850 Score = 131 bits (144), Expect = 1e-25 Identities = 175/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| | ||| | || | ||| || ||| ||||||||| ||| Sbjct 820129 AAAATCTGCATTCCTCCTCGAAGACGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATG 820070 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || || | | |||| ||||||||||| || || || ||||||||||| Sbjct 820069 TTGTAGTCTGAAAGAGTTCTTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGT 820010 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | ||||||||| || |||||| | || ||||| || | ||||| Sbjct 820009 TGATCTGGTGGGATACCTTCTTTATCTTGAATTTT-AGCTTTAACATTTTCAATAGTGTC 819951 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||| || || | ||||| ||||| || || || || || ||||| |||||||| Sbjct 819950 AGATGCTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCAT 819891 Score = 107 bits (118), Expect = 1e-18 Identities = 170/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| | ||| | || | ||| |||||| |||||| || || Sbjct 821041 AAAATCTGCATTCCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATA 820982 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| |||||||| | | || ||||||||||| || || || |||||||||||| Sbjct 820981 TTGTAATCAGAGAGTGTTCTCCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGC 820922 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | || |||||||| || || | || |||| || | ||||| Sbjct 820921 TGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTT-GGCTTTGACATTTTCAATAGTGTC 820863 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| || || || || || || ||||||||||||||||| Sbjct 820862 AGAGGCCTCTACTTCCAGTGTGATGGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||||| ||||| || |||||| || ||||| ||| Sbjct 819901 AAAATCTGCATTCCACCACGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTTTGAATG 819842 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || ||||| || || | || ||||| || || || || || |||| ||| ||| Sbjct 819841 TTGTAGTCTGAGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGTTGC 819782 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTC 33689 || ||| | || | || |||||||| || || ||| | ||| ||| ||||| Sbjct 819781 TGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGA-CATTTTCAATTGTGTC 819723 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| || || || || ||||| || || ||||||||||| Sbjct 819722 AGAGGCCTCGACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 819663 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| | ||| | || | ||| |||||| |||||| || || Sbjct 820585 AAAATCTGCATTCCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATA 820526 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| |||||||| | | || ||||| ||||| || || || |||||||||||| Sbjct 820525 TTGTAATCAGAGAGTGTTCTCCCATCCTCCAACTGTTTACCAGCGAAGATCAAACGCTGC 820466 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | || || || || || || | | |||| || | |||||| Sbjct 820465 TGGTCTGGGGGAATGCCCTCCTTATCCTGGATCTT-GGCCTTGACATTTTCGATGGTGTC 820407 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || | |||||||| || || || | || || || || |||||||| Sbjct 820406 AGAGGCTTCGACTTCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACGAATATCTGCAT 820347 >seq14 Length=2234412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || || || || ||||||||||| || || |||||| | || || Sbjct 1933606 ACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGACAGGGTGCGTCCATCCTCG 1933547 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| || || ||||||| | |||||| ||| | || | || || ||||| | Sbjct 1933546 AGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 1933487 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | || |||| || | ||||| | ||||| || | ||||| || || Sbjct 1933486 ATTTT-GGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCACCTCGAGGGTGATGGTCTT 1933428 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || |||| |||||||| ||||||||||| ||||| Sbjct 1933427 CCCAGTTAGGGTTTTTACGAAGATCTGCAT-GTTGG 1933393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688103874560