Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq2351 284 1e-71 seq2333 172 6e-38 seq3532 143 3e-29 >seq2351 Length=10305 Score = 284 bits (314), Expect = 1e-71 Identities = 559/814 (69%), Gaps = 31/814 (4%) Strand=Plus/Plus Query 40982 TTCTCTTACGCTGGCGTACAGCAGTTGATCGGGAAATATTTGGTACAGGATCGCACCAAC 41041 ||||||||||||| || |||||||| ||||||||| |||| || | ||| || | Sbjct 2394 TTCTCTTACGCTGCGGTCAAGCAGTTGGAAGGGAAATATCTGGTGCAAAACCGCGTCACC 2453 Query 41042 GGTGACATCTTCGAAACACCGCAATATGCGTTTATGCTGATTGCTATGTGTCTGCA-TCA 41100 |||||||||| ||||| | || | | || | | ||| | ||| || ||| || Sbjct 2454 GGTGACATCTACGAAAGCGCCCAGTTTCTGTATGTACTGGTGGCTGCCTGCCTGTTCTCC 2513 Query 41101 GG--ACGAACTGAGAACCCCGTATACATTTAATCATGTAGTTGATTTCTACAACGCAATT 41158 || || | | ||| | ||| | ||| ||| || ||| |||| ||| Sbjct 2514 GGTTACCCGC-GCGAAACGCGTCTGGATTACGTCAAACGCTT-----CTATGACGCGATT 2567 Query 41159 TCGGATCGT-AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCG 41217 || | | | ||| | || || || ||||| || ||| | || |||||||| || || || Sbjct 2568 TCT-ACCTTCAAGATTTCATTGCCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCG 2626 Query 41218 TCAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGT 41277 |||||| | ||||| ||||||| | || || ||||| ||| | || || Sbjct 2627 TCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCC-- 2684 Query 41278 AACCTC---TGCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGG 41334 ||||| ||| |||||||| || ||||||| ||||| |||||||| |||| || || Sbjct 2685 -ACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTATCGGCATTAACGCCGG 2743 Query 41335 ACACATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGAT 41394 | ||||| || ||||| || || |||||||||||| | ||||| ||| || Sbjct 2744 TCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGTGGTGAAGCATTCCATACTGGCTGTAT 2803 Query 41395 CCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGG 41454 || |||| |||||| | ||||| || || |||||||| ||||| || || || || || Sbjct 2804 TCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGG 2863 Query 41455 TGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCT 41514 || || |||||||||| ||| ||| | |||||| ||||||| |||| ||||||||| || Sbjct 2864 CGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCT 2923 Query 41515 GAAAAACAACAAAGGTGTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCT 41574 ||| |||||| || || || |||||| | |||||||| ||||| ||||| ||| | Sbjct 2924 GAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTT 2983 Query 41575 TAACGATTTGATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCC---C 41631 ||| | |||||||| |||| | |||| | | ||||| |||||||||| | Sbjct 2984 GAACAAGCTGATGTATCAGCGCCTGGTCAAAGGACAAGAAATCACCCTGTTCAGCCCCTC 3043 Query 41632 TGACGTTGCAAATGATCGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGA 41691 |||||| | |||||||||| || || | || || |||||| ||||||||| Sbjct 3044 TGACGTACC------CGGCCTGTATGACGCATT-TTTC--GCCGATCAGGATGAGTTCGA 3094 Query 41692 AGAACTCTAT-ACCAGTTTGGAAAAAGACCCAACGGTACGCAAGAAACGCATTAAAGCAG 41750 | | ||| | |||| | ||||||||| | | ||||||||| ||| ||||| | Sbjct 3095 ACGCTTATATCAGCAGTAT-GAAAAAGACGACAGCATCCGCAAGAAATCCATGAAAGCGG 3153 Query 41751 CAGACTTATTCCAGTTGCTTGTTCAGGAACGCGc 41784 || | ||| | || | | || |||||||| Sbjct 3154 TCGATCTGTTCTCGCTGATGATGCAAGAACGCGC 3187 Score = 129 bits (142), Expect = 7e-25 Identities = 360/539 (67%), Gaps = 24/539 (4%) Strand=Plus/Plus Query 43466 CTTTATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTT 43525 ||||||||||| || |||||||| |||||||| || ||||| |||||| || Sbjct 4919 CTTTATCTGTGCCTGATGAGCGTCAACGCGCTGGAAGCCATCCGTTTTTATGTCAGTTTC 4978 Query 43526 ACCTTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGT 43585 ||| | ||| ||||||||||| | |||||| || ||||| || || || Sbjct 4979 GCCTGCTCATTCGCCTTTGCCGAACGCGAACTGATGGAGGGCAACGCCAAAATTATCAAA 5038 Query 43586 CTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG- 43644 ||||| ||||| |||||||| || || | || ||||| || ||| | || |||| Sbjct 5039 CTGATCGCCCGCGATGAAGCGCTGCACCTGACCGGTACCCA--GCATATGCTGAATCTGA 5096 Query 43645 -GCAGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAA- 43702 || || | || || || ||||||||| ||||||| | || | || | ||| Sbjct 5097 TGCGTTCCGGCCAGGACGATCCGGAAATGGCACAAATCGCCGAAGCGTGCCAACAGGAAT 5156 Query 43703 GCAACA--CAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTAT 43760 || || | | || | || | | || ||||||| ||||| ||||| ||| || | | Sbjct 5157 GCTACGACCTGTTTGTGCTGGCTGC--AC-AGCAGGAGAAAGAGTGGGCGGAATACCTGT 5213 Query 43761 TCAGTATTGGT--GATGTTGACGGCGTGACACTGAAAAGTACAATC---GCCTATA--TC 43813 || | ||| |||| | ||| ||| || |||| ||| || ||| || | Sbjct 5214 TCCGCGACGGTTCGATGATT--GGCCTGA-AC---AAAG-ACATTCTCTGCCAGTACGTT 5266 Query 43814 GAACACTTAACCGACCAACGTATGCGAGCGGTTGGGTTACAGTCTCCGTTTAAACCGAGT 43873 ||| || | ||| | || |||| |||||| ||| | | | ||||| || || | Sbjct 5267 GAATACATCACCAATATCCGCATGCAAGCGGTAGGGCTGCCCTTGCCGTTCCAAACGCGC 5326 Query 43874 CCTAACCCGTATCCGTGGATGAACAAATGGTTGAAGTCTGACAACGTTCAGGTAGCCCCG 43933 |||||||| |||||||| || ||| || ||||||||||| ||||| || ||| Sbjct 5327 ACTAACCCGATCCCGTGGATTAATGCCTGGCTGGTCTCTGACAACGTGCAGGTTGCTCCG 5386 Query 43934 CAAGAGGTTGAAGTAAGTTCTTACCTGGTTGGCAACCTCAACACCGAGATCAGCGACGA 43992 ||||| || ||||| |||||||| ||||| ||| | | | | ||||||| || ||| Sbjct 5387 CAAGAAGTGGAAGTGAGTTCTTATCTGGTCGGCCAAATTGATTCTGAGATCAACGCCGA 5445 Score = 127 bits (140), Expect = 2e-24 Identities = 290/434 (67%), Gaps = 8/434 (2%) Strand=Plus/Plus Query 42333 ATTGCGATTGGGAATGGTTGCGCGACGAAATCAAAAAATATGGCTTGCGTAACTCAACTC 42392 ||| |||||||||| |||||||| ||||||| | | || | |||||||| || | Sbjct 3754 ATTACGATTGGGAAGCACTGCGCGACAGTATCAAAACACACGGTCTACGTAACTCCACGC 3813 Query 42393 TTTCCGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTG 42452 | || || || ||||| | || | || ||| | |||| | || ||||| || | Sbjct 3814 TCTCTGCGTTGATGCCGTCGGAAACCTCGTCACAAATTTCCAACGCCACCAACGGTATCG 3873 Query 42453 AACCGCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAACCAGGTAG 42512 |||| || ||||||| | ||| | || | || ||||| || || |||||| | Sbjct 3874 AACCACCACGCGGTCACATCAGTATCAAGGCGTCAAAAGACGGCATTTTGCGCCAGGTGG 3933 Query 42513 TACCGAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCG 42572 | ||| | | | | || ||| ||| || | || ||| |||| | || Sbjct 3934 TGCCGGATTACGAAACCCTGAAGGATGCCTACGAATTACTGTGGGAAATGCCGAAC---- 3989 Query 42573 GTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCT 42632 ||| | || || ||| | |||| | |||||||||||||| ||||| || || | Sbjct 3990 --AATGACGGCTACCTGCAACTGGTTGGGCTGATGCAGAAGTTTGTCGATCAGGCTATTT 4047 Query 42633 CTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCA 42692 |||| ||||||||||| |||||||| |||||| || |||||| |||||| Sbjct 4048 CTGCCAACACCAACTACGATCCGGCGCGCTTCCCGTCAGGAAAAGTG-CCGATGAAACAG 4106 Query 42693 TCATTGA-TGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAAC 42751 | ||| |||| ||||| || | | | ||| ||||||| ||||||||||| ||| Sbjct 4107 TTGCTGACTGACTTGCTTACCGCCTATAAGTTCGGGTTGAAAACGCTGTATTATCAAAAC 4166 Query 42752 ACCCGCGACGGTGC 42765 ||||| |||||||| Sbjct 4167 ACCCGTGACGGTGC 4180 >seq2333 Length=8475 Score = 172 bits (190), Expect = 6e-38 Identities = 509/768 (66%), Gaps = 30/768 (4%) Strand=Plus/Minus Query 154259 CAACGAGAACGCGAACAAAGACGCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 154318 |||||||||||| ||||||||| | || |||| || |||||||| ||| |||| || Sbjct 5627 CAACGAGAACGCCAACAAAGACAGTAAAGTAATCCCTACCCAGCGCGACCTGCTGGCCGG 5568 Query 154319 TATCGTAGCGAAACACTTCGC-ACGTAACCACATTCTACCAAAACACATCGTAGAAGCGC 154377 |||||| || || |||| ||| | | ||| | || || || || | || || | Sbjct 5567 TATCGTTGCCAAGCACTACGCCAAGCAAC-ATATCCTGCCGCGCGACGTGGTGCTTGCTC 5509 Query 154378 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACA 154436 |||| ||||| || || || || |||||||| ||| ||||||| || || || Sbjct 5508 ATGAACGCGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTCA 5449 Query 154437 AACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCA 154496 | ||| ||| | || | |||| ||| || | || || ||||||||||||||||| Sbjct 5448 A-CTGTATGCTGATCGACCTTGAAGGCATGTTGACCAAGGGGTTCAAGATGGGTAACGCG 5390 Query 154497 GACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCA 154556 || || || || || ||||| ||| ||||| || | | ||| || |||| ||| Sbjct 5389 GAGATTGAGCCACCAAAATCCATCTCAACCGCGACAGCAGTGACGGCCCAAATCATCGCG 5330 Query 154557 CAGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACGTT--GATAAAGTGCTGG 154614 ||| | || ||| |||||||| || ||| || || ||| ||| || | |||| Sbjct 5329 CAGGTGGCAAGCCACATCTACGGCGGCACCACCATT--AACCGTATCGATGAAATTCTGG 5272 Query 154615 CTCCGTATG---CAGAAATGACATATGAAAAGCATGTTAAGGATGCTAAAAAGTATAAAA 154671 | |||| | | | | | | || ||||||| | |||| | ||| | | Sbjct 5271 CACCGTTCGTCACCGCCA-GCCTTA--AAAAGCACCGGGAAACTGCTGATGAGTGGCACA 5215 Query 154672 TTTC-GTTG-GATCGTACATATGCGATGGAAAAGACTGAAAAAGATGTGTTT-GATGCTT 154728 || | | || | || | ||||| || || |||||||| ||| | || || | Sbjct 5214 TTCCCGATGCGGACG--CCTATGCACTGTCTCGTACCGAAAAAGA-GTGCTACGACGCCT 5158 Query 154729 TCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCG 154788 |||| ||| ||||| ||||| || |||||||| || ||||| || || ||||| || | Sbjct 5157 TCCAGTCGCTGGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGACACCGTTTG 5098 Query 154789 TTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCCAGAAAGC 154843 | || || ||||||| || || |||||| || |||| ||| || | Sbjct 5097 TCACCTTTGGTTTCGGTCTCGGCACCCGTTGGGAATCG-----CGCCTGATTCAGCAATC 5043 Query 154844 GATTCTGAAAAACCGTATTCGTGGTCTGGGTAAACAAGGTATTACCCCTGTGTTCCCTAA 154903 || ||| ||||| ||| |||||||| ||| | ||| ||| | |||||||| || Sbjct 5042 CATCCTGCGCAACCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCCCAA 4983 Query 154904 ACTGGTCATGTTTATGGAAAAAGGTGTAAACATGAATCCTGGGGATCGTAACTATGACAT 154963 |||||| | ||| | ||||| || || ||| |||| ||||||||||| Sbjct 4982 ACTGGTGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGACAT 4923 Query 154964 CAAACAATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATAT 155011 ||| ||| |||| ||||| ||||| || || |||||||| ||||| Sbjct 4922 CAAGCAACTGGCACTGGATTGCGCCAGCAAGCGGATGTACCCGGATAT 4875 >seq3532 Length=11862 Score = 143 bits (158), Expect = 3e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 51018 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCT 51077 || ||||| || || ||||| |||||||| || || || || ||||| ||| ||||||| Sbjct 11335 GTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCG 11276 Query 51078 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 51137 || ||||| || || || ||||| ||||| || ||||| ||||| ||||||||||| || Sbjct 11275 GTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGT 11216 Query 51138 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 51197 || || || |||| |||||||| || || ||||| || | | || || || |||||| Sbjct 11215 TTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGC 11156 Query 51198 ATGTAAT 51204 |||||| Sbjct 11155 CTGTAAT 11149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569990927047680