Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq2351 188 7e-43 seq3176 109 6e-19 seq3532 104 2e-17 seq2563 86.0 7e-12 >seq2351 Length=10305 Score = 188 bits (208), Expect = 7e-43 Identities = 290/412 (70%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 135351 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCC 135410 |||||| || || | ||| |||||||| || || || || | |||||| |||||||||| Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 135411 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135470 |||||||| | ||| | ||| ||||| | || | |||||||| |||||| | | Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 135471 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135530 || ||||| ||||| || | |||||| |||||||| || || || || ||||| ||||| Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 135531 TTTCCAGAATGGGATAACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCT 135588 ||| |||| || ||| ||||||||| ||| |||||||| | ||| || Sbjct 2816 TTTATAGAAAGGAATACAGCCAGTATG--GAATGCTTCACCACCGCGAATCGGGCTACCC 2759 Query 135589 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATG 135648 ||| ||||| || ||||| || |||||||| ||||||| || || || | | Sbjct 2758 AGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACG 2699 Query 135649 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACAC 135708 || ||| | | || |||| ||| | || ||| | | ||||||| ||| || Sbjct 2698 ATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAG 2639 Query 135709 GAACTAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCA 135760 || || || || || |||||||||||||| || | ||| ||||| || |||| Sbjct 2638 GAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCA 2587 >seq3176 Length=18404 Score = 109 bits (120), Expect = 6e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 53978 AAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAG 54037 |||||| | || | || || ||||| | |||||||| ||||||| ||| ||||| Sbjct 6312 AAATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAG 6371 Query 54038 ACTATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGG 54097 ||||||||||| || ||||||||||| || || || | |||||| || || || || Sbjct 6372 CGAGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGG 6431 Query 54098 ATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCC 54157 ||||| | || |||| || |||||| || || ||||| || |||| || || || Sbjct 6432 GTGTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACC 6491 Query 54158 ACCTTCGA 54165 |||||||| Sbjct 6492 ACCTTCGA 6499 >seq3532 Length=11862 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53990 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 54049 ||| || || ||||||| || |||||||| ||||| ||||| |||| ||||| || Sbjct 11159 TTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACG 11218 Query 54050 CACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 54109 |||||| ||||||||||| || || || | ||||||||| || || || |||| || || Sbjct 11219 CACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGC 11278 Query 54110 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGAC 54166 || || | |||| || || ||||| || |||| || || || ||||| || Sbjct 11279 ATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCAC 11335 >seq2563 Length=1848 Score = 86.0 bits (94), Expect = 7e-12 Identities = 210/309 (68%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 55074 TAATATTTTATT---TTGGATCTGGG-TATTTGCTGTGTGGTAATTGTAGATGAGGACCA 55129 ||||||| | || ||| || ||| |||| ||| ||||||||| | |||||| ||| Sbjct 1133 TAATATTATGTTCCATTGCATACGGGATATTCTCTGAATGGTAATTGAAAATGAGGCCCA 1074 Query 55130 TCTTTAAAACTAGTCCAATCCCCACCCCATTCAACAGGAACACCCAATTC--TCGACCAG 55187 ||||| | | |||||||| || |||||||||| |||| || || |||| | Sbjct 1073 TCTTTTAGTGTTGTCCAATCACCTCCCCATTCAATGGGAATGGATAACTCCTTCGAT--G 1016 Query 55188 CTTGTTTAAATGCATCAGCGATCATGC-GGTAATATTTCATATTCCATGTATCTTTATCT 55246 |||||||||||||||| || || ||| ||||||||| | |||| || | ||| | Sbjct 1015 CTTGTTTAAATGCATCTGCAAT-TTGCTCATAATATTTCCAAGTCCAATTAACGTTACCA 957 Query 55247 TTCGGATACGCTACAACGTCAACCGCGAAACCGTGAAGATGACGAGATTTCATAGTCTTA 55306 || || || || || ||||| ||| ||| |||||| | | ||||| || || Sbjct 956 TTGACGTATGCGACTACATCAACGGCGTGACCTGTAAGATGCCTACTATTCATTGT-TTG 898 Query 55307 GAT-TTACCTTCCGCAACATATTTCTTTTGCGTTTCTAGACTACGTACACCTTCCGTAAT 55365 | | ||||||| | || | || || || |||| | || ||||| ||||| Sbjct 897 GCTCTTACCTTGTGAAAAAAGTTGTTTCTGTCTTTCAATTGAGCGCCTTCCTTCTGTAAT 838 Query 55366 ACCAAAATC 55374 |||||||| Sbjct 837 GCCAAAATC 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522802867691520