Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq3532 197 1e-45 seq3176 152 6e-32 seq2351 122 9e-23 >seq3532 Length=11862 Score = 197 bits (218), Expect = 1e-45 Identities = 154/184 (84%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 62328 ATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAG 62387 |||| || || ||||| || ||||| | || |||||||| |||||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 62388 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGAT 62447 |||| || || ||||||||||| || |||||||||||||||||||| |||||||| || | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 62448 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 62507 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 62508 CTTC 62511 |||| Sbjct 11329 CTTC 11332 >seq3176 Length=18404 Score = 152 bits (168), Expect = 6e-32 Identities = 140/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 62338 CTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 62397 || ||| || ||||| | |||||||| |||||||||| ||||| ||||| ||||| Sbjct 6324 CTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCG 6383 Query 62398 AACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGC 62457 || |||||||| || ||||||||||||||||||||||||||||| || || | | || Sbjct 6384 CACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGC 6443 Query 62458 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514 ||| ||| ||||||| || ||||| ||||||||||||||||||||||| || Sbjct 6444 ATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGAT 6500 >seq2351 Length=10305 Score = 122 bits (134), Expect = 9e-23 Identities = 274/407 (67%), Gaps = 6/407 (1%) Strand=Plus/Minus Query 142403 CGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAACAGGTTCTCTACTTCTAAGTGC 142462 ||||| | |||||||| ||| || ||||| |||| |||| | || ||||| | ||| Sbjct 2953 CGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGC 2894 Query 142463 CACATCGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTT 142522 |||| ||| ||| || || || || || || || | ||| || || || || ||||| Sbjct 2893 CACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTC 2834 Query 142523 ACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAA--CTTCACCCA 142580 ||||| || ||||||||||| |||| |||||| || ||||| ||| ||||||| Sbjct 2833 ACTGCGGTCTGGAAATGTTTATAGAAAGGAATACAGCCAGTATG--GAATGCTTCACCAC 2776 Query 142581 TACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTT 142640 | |||| ||| ||||||| ||| |||| || |||||||| || || | Sbjct 2775 CGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCT 2716 Query 142641 TAGAAATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGG 142700 |||| |||| | || | || || |||||| || | | || ||| Sbjct 2715 GTGAAACGTATTTCACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGC 2656 Query 142701 CTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTG 142760 ||||| | || || |||||| || ||||| ||||| | || | ||| || | Sbjct 2655 ACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCG 2596 Query 142761 GGGTTGGCAATGAAA-CTTGATGAGTAGAAACGGCATCATAAAAACG 142806 | ||||||||||||| ||||| | ||||||| || ||||| || || Sbjct 2595 GCGTTGGCAATGAAATCTTGAAG-GTAGAAATCGCGTCATAGAAGCG 2550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540843572828160