Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025449.1 Length=166783 Score E Sequences producing significant alignments: (Bits) Value seq3532 188 8e-43 seq2351 158 1e-33 seq3176 150 2e-31 seq2656 82.4 8e-11 >seq3532 Length=11862 Score = 188 bits (208), Expect = 8e-43 Identities = 152/184 (83%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60224 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60283 |||||| || || || || ||||| | || ||||| || |||||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 60284 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60343 |||| || || ||||||||||| || ||||||||||||| |||||| ||||||||||| | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 60344 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60403 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 60404 CTTC 60407 |||| Sbjct 11329 CTTC 11332 >seq2351 Length=10305 Score = 158 bits (174), Expect = 1e-33 Identities = 297/437 (68%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 138618 TTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 138677 |||| ||| || || ||||| | ||||| | |||||| |||| ||||| ||| || Sbjct 2986 TTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTC 2927 Query 138678 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 138737 |||| || || || |||| ||||||| |||||| | || ||| | || || || Sbjct 2926 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCT 2867 Query 138738 CCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAA 138797 ||||| || | || |||||||| || ||||| ||||| ||||| |||||||| | ||| Sbjct 2866 CCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAA 2807 Query 138798 GGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATC 138857 |||||| |||||||| | ||||||| || |||| ||| |||||||| Sbjct 2806 GGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATA 2747 Query 138858 ATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAA 138917 ||| ||||||| || || || || || | || | |||| || || | | ||| Sbjct 2746 CGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAG 2687 Query 138918 GCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACGCATGAACTGAACTGT 138977 | || || || | ||| || || |||||| | ||||| || |||||||| Sbjct 2686 GTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGA 2627 Query 138978 CGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGAT 139037 || || || ||||| || | ||| || || |||||||||||||||| ||||| Sbjct 2626 CGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTTGAAGGTAGAA 2567 Query 139038 ACTGCTTCATAAAAACG 139054 | || ||||| || || Sbjct 2566 ATCGCGTCATAGAAGCG 2550 >seq3176 Length=18404 Score = 150 bits (166), Expect = 2e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60238 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60297 || || ||||| | |||||||| |||||||||| ||||| ||||| ||||| || Sbjct 6328 GTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCGCACG 6387 Query 60298 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60357 |||||||| || ||||||||||||| |||||||||||||||||| || | | ||||| Sbjct 6388 GCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGCATCC 6447 Query 60358 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60410 ||| ||||||| || ||||| ||||||||||||||||||||||| || Sbjct 6448 AACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGAT 6500 >seq2656 Length=1220 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 68750 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 68809 |||||| | || ||||||||||| | |||||| || ||||||||| |||||||||||| Sbjct 182 TGGTGCCGGCTGCCGGAATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 241 Query 68810 ACTGAGCTAA 68819 |||||||||| Sbjct 242 ACTGAGCTAA 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533551134551040