Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025459.1 Length=53744 Score E Sequences producing significant alignments: (Bits) Value seq3777 288 3e-73 >seq3777 Length=50401 Score = 288 bits (318), Expect = 3e-73 Identities = 442/626 (71%), Gaps = 6/626 (1%) Strand=Plus/Plus Query 48235 TGGTGCTTTGAAATCCAGATGGGTTTCAAGTTTCAGATGCAGGATTTTCACTCGATTATA 48294 ||||| ||| || | |||||||| ||||||||||| | || ||||||||||| ||| || Sbjct 24458 TGGTGTTTTCAATTACAGATGGGATTCAAGTTTCAAAAACAAGATTTTCACTCTATTGTA 24517 Query 48295 TTTGAGTTCTGTCAGAAGATCGTCAATGGCGAAATAGACAGAGGCATTGTCTGCATCCCA 48354 ||||| | || ||||| | || |||| |||||||| ||| |||||| ||| ||| Sbjct 24518 TTTGATGTATGCCAGAAAGTTATCGATGGTGAAATAGATAGACTCATTGTTACCATTCCA 24577 Query 48355 CCTCGGCACTCGAAGACTCAGATCCTGAGTATCTTCCTTCCGCTGTACTCGTTCTGTAAT 48414 || |||| || || || ||||| | ||| ||| | || ||||| || || || || Sbjct 24578 CCAAGGCATTCTAAAACACAGATTTTATCTATTTTCTTACCTCTGTATTCTTTTTGCCAT 24637 Query 48415 AACCCCTCCAGCCACAATATAATCACCTCGTACGCGGACGACGTGGTGGCGGAGTCTTCG 48474 || || || || ||||| || || || || || || || || || ||| || || Sbjct 24638 AATCCGGGAAGTCAGAATATTATAACATCCTATGCAGATGATGTCGTTCAGGAATCCTCT 24697 Query 48475 GGTTATATCCGGCAAATAATGCTGGACTTGTTGTTCATGAAGATCTTCCCTGCTGTACGT 48534 || |||||| || |||||| ||| |||| ||||| |||||||| ||| | Sbjct 24698 GGATATATCAGGGCGATAATGACTGACCCCATGTTTATGAAAATCTTCCCCAAAGTAAGA 24757 Query 48535 AT-AGACCAGAACAAACGCTCCCTTGAGCGCTGGGGTACTACACGGTCTGG--CGTAATG 48591 || | |||| ||||| | || || ||||| ||||| || |||||| || ||| | Sbjct 24758 ATCAATCCAG-ACAAAAGATCTCTAGAGCGATGGGGAACGACACGGCAAGGAACGT--TA 24814 Query 48592 CACGCTGTACCAACAGGTGGTAAGATGACTGGTAAGGGCGCTGGCTCACTGTCACCAACC 48651 || || || || || || || || | || || || || ||||| ||| | || || | Sbjct 24815 CATGCCGTGCCTACCGGCGGGAAACTTACAGGAAAAGGTGCTGGTTCATTATCCCCTGTC 24874 Query 48652 TATTCAGGATGCTTCGTGGTCGACGACGCGATCAAACCGAAGGACGCATACTCTGCGCCT 48711 ||||| || || ||||| ||||| |||| || ||||| || ||||| || || | | Sbjct 24875 TATTCCGGTTGTTTCGTTGTCGATGACGTTATTAAACCCAAAGACGCTTATTCAGGAACA 24934 Query 48712 GTTCGGAAAGAGATCAACGACCGATTCGACAACACCTTCATGTCGCGGCTTGCGAACGAC 48771 || ||| ||| || || ||| |||| ||||| || || ||||| || ||||| || || Sbjct 24935 GTACGGTCAGAAATTAATGACAGATTTGACAATACTTTTATGTCCCGTCTTGCCAATGAT 24994 Query 48772 GGTGAAGTCCAGGACGATGACGGCAATGTCGTCAAGTGTCCAAGAACACCCATGGTTATC 48831 |||| | ||||| || || |||||| | | || |||||||||||||| ||| |||| Sbjct 24995 GGTGTTATTCAGGATGAAGAAGGCAATTTAATTAAATGTCCAAGAACACCTATGTGTATC 25054 Query 48832 ATAATGCAGCGAGTGCATGATGACGA 48857 || |||||| | || ||||| || || Sbjct 25055 ATCATGCAGAGGGTTCATGACGAAGA 25080 Score = 87.8 bits (96), Expect = 6e-13 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 53142 CTTCGACCGTATCGGTAAGGCCCAGGTCATCAACGCTCGTGCAACTGACCTGCCGAAGTC 53201 || ||||| | | ||||| || ||||| || || || | ||||| ||| | || || || Sbjct 30240 CTACGACCATGTAGGTAAAGCTCAGGTGATTAATGCCAGAGCAACAGACTTACCAAAATC 30299 Query 53202 CGACATCTCCGGCAAAGAATACTCCATCACTGTCAAGTCCGTAGGAGTTGCTTACGACTA 53261 | |||||||| |||||| | || ||||| ||||| || || || || |||| Sbjct 30300 AAATATCTCCGGTAAAGAAGAGAGTATTACTGTAAAGTCAGTGGGTACAGCCTATGACTT 30359 Query 53262 CGACATCGACGAGATCGCTGCCGCCAAGATGGCCGGTATGCCGCTGGAAGCTCGTAAGAC 53321 || || || || | ||| || | | | || ||||||||||||| ||||| | Sbjct 30360 TGATATTGATGAAGTGAATGCAGCGGCGGTTACAGGGATGCCGCTGGAAGGGCGTAAAGC 30419 Query 53322 CATGGCCGCTCGCCGTGGTTACGAGGAGTACATCAACTCCGTTGTATGGCGTGGTGAT 53379 || || ||| | ||||||||| |||| || || || | ||| ||| ||||||| Sbjct 30420 CAATGCTGCTACACATGGTTACGAACAGTATATTAATTCTGCTGTCTGGTATGGTGAT 30477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171851101994496