Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq3532 178 1e-39 seq3176 136 3e-27 seq3764 116 3e-21 >seq3532 Length=11862 Score = 178 bits (196), Expect = 1e-39 Identities = 146/178 (82%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 109109 GGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGCAT 109168 || ||||| |||||||| ||||||||||| || ||||| ||||||||||| || || || Sbjct 11326 GGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTAAAACAC 11267 Query 109169 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 109228 ||||||||||| |||||| ||||||||||||| || ||||||||||| || || ||||| Sbjct 11266 CCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTCAACTCA 11207 Query 109229 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAAT 109286 |||| || |||||||| || ||||| || | ||||| || ||||| || || |||| Sbjct 11206 TTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGCCTGTAAT 11149 >seq3176 Length=18404 Score = 136 bits (150), Expect = 3e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 109107 GTGGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGC 109166 |||||||||| |||||||| ||||| || || |||| ||| ||||| | | | Sbjct 6493 GTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCCATGGAAC 6434 Query 109167 ATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACT 109226 | |||||||||||||||||| ||||||||||||| || |||||||| || ||||| |||| Sbjct 6433 ACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGCTTCAACT 6374 Query 109227 CTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAG 109276 | ||||| |||||||||| |||||||| | ||||| || ||| || Sbjct 6373 CGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAG 6324 >seq3764 Length=2321 Score = 116 bits (128), Expect = 3e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 9581 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTA 9640 || |||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 2120 ATATGGTGGCCCCTGTTGGGTTTGAACCAACGACCAAGCGATTATGAGTCGCCTGCTCTA 2179 Query 9641 ACCACTGAGCTAAGGGGCC 9659 ||||||||||||||||||| Sbjct 2180 ACCACTGAGCTAAGGGGCC 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386858090637952