Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq664 95.1 4e-16 seq145 89.7 2e-14 seq23 89.7 2e-14 >seq664 Length=469550 Score = 95.1 bits (104), Expect = 4e-16 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||| ||||| |||||| Sbjct 346697 ATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCA 346756 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 346757 ATCCCGGGTTTCGGC 346771 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 346848 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 346907 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 346908 CCGGGTTTCGGC 346919 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 346997 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 347056 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 347057 CCGGGTTTCGGC 347068 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 347146 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 347205 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 347206 CCGGGTTTCGGC 347217 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 347295 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 347354 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 347355 CCGGGTTTCGGC 347366 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 347444 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 347503 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 347504 CCGGGTTTCGGC 347515 >seq145 Length=1138882 Score = 89.7 bits (98), Expect = 2e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||| ||| ||| |||||||| ||||||||| |||||||||||||||||| ||||| |||| Sbjct 390782 TTAAGGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTT 390841 Query 2824 CAACCCCGGGCTTCAGC 2840 | | |||||| ||| || Sbjct 390842 CGATCCCGGGTTTCGGC 390858 >seq23 Length=2299455 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 2759 TGTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCC 2818 |||| | |||| ||| |||||||| ||||||||| |||||||||||||||||| ||||| Sbjct 2195740 TGTGCCTTTGGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCC 2195799 Query 2819 TGGTTCAACCCCGGGCTTCAGC 2840 ||||| | |||||| ||| || Sbjct 2195800 CGGTTCGATCCCGGGTTTCGGC 2195821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848912127360