Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq141 107 3e-17 seq14 100 4e-15 seq26 86.0 9e-11 >seq141 Length=1333187 Score = 107 bits (118), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 724897 CGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCAT 724956 ||||||| ||| |||| |||||| ||| |||||| || || | || || | | Sbjct 705043 CGTACTCCACCTACATCTTCAAGGTCCTCCGGCAGGTCCAGCCGGACATCGGTGTG---T 705099 Query 724957 CCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG 725016 |||| || | | ||| |||||||| || || |||||||| |||| | |||| Sbjct 705100 CCTCGAA---GGCGATGAGCATCATGAATAGCTTCGTGAACGACATCTTCGAGAGGATCG 705156 Query 725017 GCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 ||||||| || ||| || | | || ||||||||| |||| ||| | || | |||| Sbjct 705157 CCACCGAGTCCTCTCGTCTCGTCCACTACAACAAGCGACACACCATCACCTCGAGGGAGA 705216 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 | ||||| |||||||||||| | | | || ||| || ||| |||||| ||| ||||| Sbjct 705217 TTCAGACAGCCGTGCGCCTGCTTTTACCGGGAGAATTGTCCAAGCACGCGGTCAGCGAGG 705276 Query 725137 GCACCA 725142 | |||| Sbjct 705277 GGACCA 705282 >seq14 Length=2234412 Score = 100 bits (110), Expect = 4e-15 Identities = 324/497 (65%), Gaps = 11/497 (2%) Strand=Plus/Plus Query 262927 AACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACC 262986 ||||| |||| |||| | ||||| || || | || | ||||||||||| |||| | Sbjct 232515 AACTCTCTGCTACTGGCACCAATGCCAACAGCATCAACAGCCCAGATCCTGGGTAACAAC 232574 Query 262987 GAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 ||||| ||||| | ||| |||||||||||| | | |||||||| || || || || Sbjct 232575 GAGGCCATCGAGCCCTACACCAGCAACATCTACTCCAGGCGCGTGCTGTCTGGTGAATTC 232634 Query 263047 ACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGG-ACGCCCGA 263105 || ||||| | ||| || | ||| | | | |||| || ||| ||| | || Sbjct 232635 CAGGTCGTCAATCCCCATCTCCTGAAGGACCTCACTGAACGCGATCTCTGGGACGAC-GA 232693 Query 263106 CTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGT 263165 | | | | | | || ||| | || ||| | ||| | | |||| | | Sbjct 232694 CATGAAGAATCTGATAATAGCGAACAATGGGTCGATCCAGAGTAT------CGAGAAAAT 232747 Query 263166 GCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCAT 263225 || | || ||||||| || | || || || |||||| | ||| | || ||| | | Sbjct 232748 ACCAGCAGACATCAAGGCACTGTACAGAACAGTCTGGGAGATTCCCCAGAGGATGATCCT 232807 Query 263226 TGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCT 263285 | ||||| || || || | | | | | |||| ||| ||||||| ||| | || | Sbjct 232808 GAAAATGGCTGCTGATCGAGGGGCTTTTATCGATCAGTCCCAGTCGACCAATGTTCACAT 232867 Query 263286 CGCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGC-GGCC 263344 ||| || || | |||| ||||||| ||||| || | ||| | || || Sbjct 232868 GGCCAGTCCAACCCCTGAGAAGCTCACGTCCATGCATTTCTTCGGTTGG-GAAGCTGGAT 232926 Query 263345 TCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCG 263404 | |||||||| ||||||||||| | || ||| |||| ||| |||||||||||||| | Sbjct 232927 TGAAGACTGGGATGTACTATCTCAGGACGAAGCCAGCTGTCAATGCCATTCAATTCACTG 232986 Query 263405 TCGATCAGGCGATGGCT 263421 |||| || ||| |||| Sbjct 232987 TCGACAAGACGA-GGCT 233002 Score = 100 bits (110), Expect = 4e-15 Identities = 324/497 (65%), Gaps = 11/497 (2%) Strand=Plus/Plus Query 262927 AACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACC 262986 ||||| |||| |||| | ||||| || || | || | ||||||||||| |||| | Sbjct 776068 AACTCTCTGCTACTGGCACCAATGCCAACAGCATCAACAGCCCAGATCCTGGGTAACAAC 776127 Query 262987 GAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 ||||| ||||| | ||| |||||||||||| | | || ||||| || || || ||| Sbjct 776128 GAGGCCATCGAGCCCTACACCAGCAACATCTACTCCAGGCGTGTGCTGTCTGGTGAATTT 776187 Query 263047 ACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGG-ACGCCCGA 263105 || ||||| | ||| ||| | | | | | | ||| || ||| ||| | | Sbjct 776188 CAGGTCGTCAATCCCCATCTGCTGAGGGACCTCACTGATCGCAATCTCTGGGACGATC-A 776246 Query 263106 CTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGT 263165 | | | | | | || ||| | || || | ||| | |||| ||| | Sbjct 776247 CATGAAGAATCTGATAATAGCGAATAATGGGTCAATTCAGAGTATTGA------GGAAAT 776300 Query 263166 GCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCAT 263225 || | || |||||||| |||| || || || |||||| | ||| | || ||| | | Sbjct 776301 ACCAGCAGACCTCAAGGCACTCTACAGAACAGTCTGGGAGATTCCCCAGAGGATGATCCT 776360 Query 263226 TGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCT 263285 | ||||| || || |||| | | | |||||| ||| ||||| ||||| | || | Sbjct 776361 CAAAATGGCTGCTGATCGCGGGGCTTTTGTCGATCAGTCACAGTCACTCAATGTTCACAT 776420 Query 263286 CGCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGC-GGCC 263344 ||| | || || | |||| ||||||| ||||| || | ||| | || || Sbjct 776421 GGCCAATCCAACCACTGAGAAACTCACGTCCATGCATTTCTTCGGTTGG-GAAGCTGGAT 776479 Query 263345 TCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCG 263404 | |||||||| ||||||||||| | || || || |||| |||||||| ||||| | Sbjct 776480 TGAAGACTGGAATGTACTATCTCAGGACTAAACCTGCCACCAATGCCATTCAGTTCACTG 776539 Query 263405 TCGATCAGGCGATGGCT 263421 |||| || ||| |||| Sbjct 776540 TCGACAAGACGA-GGCT 776555 >seq26 Length=2876367 Score = 86.0 bits (94), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || | ||||| || |||||| || ||| | ||||| ||| || Sbjct 1291440 ATCTACAAAGTTTTGAAGCAAGTTCACCCCGACAC---TGG---AGTCTCCAGCAAAGCC 1291387 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||||||||| |||| | || | | |||| ||| Sbjct 1291386 ATGAGCATCATGAACTCATTCGTCAACGACATCTTCGAAAGAATTGCCGCCGAAGCCTCG 1291327 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | |||| | || |||||| || || ||| | | || ||||| ||||| || || Sbjct 1291326 AGATTGGCTCACTACAACAAACGTTCAACCATCACCTCTCGGGAGATTCAGACAGCTGTT 1291267 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || | | || || |||| | ||||| ||||| || ||||||| Sbjct 1291266 CGTCTGCTCCTTCCAGGAGAGTTGGCTAAACACGCTGTCTCTGAAGGCACCA 1291215 Score = 86.0 bits (94), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | |||||||| ||||| | || | ||| | |||| |||| || Sbjct 1872257 ATCTACAAGGTCTTGAAGCAGGTTCACCC--GGACACTGGGGTC----TCCAGCAAGGCC 1872310 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||||||||| |||| | || | | | || || Sbjct 1872311 ATGAGCATCATGAACTCATTCGTCAACGACATTTTCGAAAGAATTGCCGCTGAAGCTTCA 1872370 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | | ||||||||| || ||| | || ||||| ||||| || || Sbjct 1872371 CGATTGGCTCATTACAACAAGCGTTCTACCATCACTTCTCGGGAGATTCAGACTGCTGTT 1872430 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | | | || || ||||| | ||||||||||| || ||||||| Sbjct 1872431 CGTTTACTACTTCCAGGAGAGCTGGCTAAACACGCCGTCTCTGAAGGCACCA 1872482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177428479106816