Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_026601.1 Length=37238 Score E Sequences producing significant alignments: (Bits) Value seq3688 618 1e-172 seq3855 136 9e-28 seq1892 131 4e-26 >seq3688 Length=22785 Score = 618 bits (684), Expect = 1e-172 Identities = 927/1307 (71%), Gaps = 25/1307 (2%) Strand=Plus/Plus Query 13986 CCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGTG 14045 ||| | ||| |||| || ||||| || ||||||||||| | |||||||| || ||||| Sbjct 6451 CCGAAAGGCGAGCAGGACGCCATCGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTC 6510 Query 14046 AGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATC 14105 |||||| | || ||| | ||||| | | |||| |||||| || ||||| | | Sbjct 6511 AGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCCCTGGTGGTG 6570 Query 14106 ATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTTC 14165 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| ||| Sbjct 6571 ATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTC 6630 Query 14166 AACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAGGTC 14225 ||||| || ||| ||||||||| | | | ||||| ||| |||||||||||| | Sbjct 6631 AACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGCATGGGGCGCGTCTGGCAGATG 6690 Query 14226 GGCACCATCGTTACGGCGAACGATGCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGATG 14285 ||||||||| | ||| |||||| |||||| ||||| |||| ||| || | || Sbjct 6691 GGCACCATCCTGACGCGCAACGATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTG 6750 Query 14286 CGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGATCGGCGACGACCTGGAGAAC 14345 |||||||| || ||||| ||| |||| |||||||||||||| ||||| | |||||| Sbjct 6751 CGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGAAC 6810 Query 14346 GACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAAACC 14405 |||||| | || |||| |||||| |||||||||||||||||||||||||||| |||||| Sbjct 6811 GACGAGCAGGTACGCAACCCGGACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACC 6870 Query 14406 GTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGGACCATCCTT 14465 || ||| | || || || | || | | || ||| || ||||| |||||||| Sbjct 6871 GTGCTGCCGCTGGGTGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTG 6930 Query 14466 CACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGGAAGC-GGCGCAAGTT 14524 || ||||||||||| | || ||| ||||| |||||||| ||| || ||||| || Sbjct 6931 CATTACGACTCGGTGTTATCACGCACCCTGAATAACCCGCTATGGCGGCAGGCGC-GCTT 6989 Query 14525 CAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAGGAACTTCT 14584 ||||| | | | |||||| | || ||||||||| |||||| | | | Sbjct 6990 TAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGTTGTGGGAGAGCTGGGAGCAGCGCTT 7049 Query 14585 GCTCAACTCCGACGACGAGGGCGCCGCCGCACTGGCCTTCTACCAGGAACGCGTCGCCGC 14644 || ||| | || || | || |||| || || || | || | ||| Sbjct 7050 GCGTAACCAGGGAGAGGATG----CGGCGCA--GGATTTTTATACGTCACACCGTACCGA 7103 Query 14645 CATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAACTCATGGT 14704 |||||||| |||||| ||| |||| | | ||| || || | || ||| Sbjct 7104 GATGGAGGAAGGCGCGGAAGTCTCCTGGTCCGCACGGCCGCTGCT---GACCCTGATGCA 7160 Query 14705 GAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTGTCCA 14764 | || ||||| || || ||| | | || || | || | ||||| | ||| ||| Sbjct 7161 TATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTCAG 7220 Query 14765 GGGCGAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGC 14820 || ||| | || | || ||| |||||||| |||||||||||||| || Sbjct 7221 CGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACG 7276 Query 14821 AGTGGATGTTCTACGGCGCGTGCGACCCGTCCCTGGGTAAGCAAGGCTCCAGTCGCGACC 14880 ||||| | |||||||| || |||||||| ||| || ||| || |||| || |||| Sbjct 7277 AGTGGCTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACC 7336 Query 14881 C--CAGCGCCATCCTGGTGGGTGGGTTCAATCGGGAAACAGGCGTCCTGGACGTGGTCGA 14938 | |||||| | ||||| ||||| || ||||| | || ||||| ||||| ||||| || Sbjct 7337 CGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGA 7394 Query 14939 GGCTGCCATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCACCATGCAGCG 14998 || || |||||||| ||||||||| || ||| | || || | |||| Sbjct 7395 AGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAA 7454 Query 14999 GGCCTATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTTCTGCGCAC 15058 || || ||||| |||||||||||| |||||||||| ||||| |||||||| |||||||| Sbjct 7455 GGAATACCACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCAC 7514 Query 15059 CGAGCTGGTGAAGCGCTCGGCCAAGGCTGGCT-GCCCAGTACCTGCCCGAGCGATCACGC 15117 ||||||| | |||||| ||| || ||||| | ||| || || || || || || | | Sbjct 7515 CGAGCTGATTAAGCGCGCGG-CACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATCC 7573 Query 15118 CACACGCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCCTAA 15177 | || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| || | Sbjct 7574 CCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTA 7633 Query 15178 TCCGTCTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGGCACTTCCCGGCCGCAG 15237 |||||||||| | ||||||||| ||| ||| |||||||| ||||| || ||| | Sbjct 7634 TCCGTCTGCACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCCG 7693 Query 15238 ACCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGATGCTAGCC 15284 |||| ||||| ||||| ||||| ||||| |||||||||| ||| ||| Sbjct 7694 ACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGCTGGCC 7740 Score = 122 bits (134), Expect = 2e-23 Identities = 596/923 (65%), Gaps = 49/923 (5%) Strand=Plus/Plus Query 15545 CATCCTGGTCGAGGCCGAACAGGGCAACCTCCAAGCCCAAGCCGAACTGTTCATGGACAT 15604 ||||||| ||||||||| ||||| |||| || || || ||||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 15605 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTG- 15663 |||||| ||||||| |||||| || ||||| ||||||||||| ||| | || || Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGC---CGC-CGTTCGGTGA 8085 Query 15664 -GCCTGG-ATTGGGCGG-TCGAGCCCCCGCGTAACGCCTCGGCGGCCGAGAAAGCCGATG 15720 ||| | |||| | | ||| |||||| | || ||| || |||| ||||| Sbjct 8086 TGCCGCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATGCGCAGGA-AAAGGCGATG 8144 Query 15721 CCG-ACTACCTGCACGAGCTGTTGCTCGACCTGGAAGGGCTGGAGGACTTGCTGCTCGAT 15779 || || | | ||| ||| |||||| | | | || ||||| |||| Sbjct 8145 GCGGACGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 15780 GCGCTGGACGGCATCGGCCACGGCTA--CAGCTGTATCGAGCTGGAGTGGGCGTTACAAG 15837 |||||||| ||| |||||||||| | || || || ||| |||| ||| Sbjct 8205 TTGCTGGACGCCATTGGCCACGGCTTTGCCGCCGTG--GAAATGGTGTGGAA---ACA-- 8257 Query 15838 GGCGCGAG-----TGGATGCCGCTG-GCGTTCCACCACCGACCGCAGAGCTGGTTCCAG- 15890 |||| | ||| |||| ||| || ||| || | || ||||| ||||||||||| Sbjct 8258 GGCGGAAAACATCTGGCTGCC-CTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGA 8316 Query 15891 -CTCAACCCCGAAGACCAGAACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGC 15949 | |||||| | |||| |||| | || ||| ||| ||||| | ||| | | Sbjct 8317 CCGCAACCC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGA 8374 Query 15950 CTTGCAGCCCTTCGGCTGGATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCG 16009 | | ||||| |||||| | | || || | | || ||||| || ||| Sbjct 8375 GCTTAATCCCTTTGGCTGGCTGCTGCATCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGA 8434 Query 16010 CAGCGGCCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCCGCCACTACGCCACCTCCGA 16069 ||||| |||||||| || |||| ||| | ||||||||| | || || || Sbjct 8435 AAGCGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGTGA 8494 Query 16070 CCTGGCGGAAATGCTGGAAATCTATGGCCTGCCGATCCGGCTGGGGAAATA-TCCGCCAG 16128 |||||||||| | ||||||||||| |||||||||| ||| |||| | || |||| | | Sbjct 8495 CCTGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGG 8554 Query 16129 GTACTGCCGACGAGGAAAAGGCAACCT--TGCTGCGGGCCGTTACCGGCCTGGGTCACGC 16186 | | | || || |||||| ||| | ||||| |||| | || |||||| || Sbjct 8555 GGCCAG-TGAAGAAGAAAAG--AACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAA 8611 Query 16187 TGCCGCTGGGATCATCCCCGAAACCATGGCCATCGACTTCCAGCAGGCGGCGCAGGGCAG 16246 |||| || || |||| |||| || || ||| ||| || || || ||||| | Sbjct 8612 CGCCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGG--G 8669 Query 16247 CAG--CGAGCCGTTCCTGGCGATGATGCGGCAAAGCGAAGACGCCATATCCAAGGCGGTC 16304 ||| ||| ||||||| | ||||||| | ||||| | || ||||||| | Sbjct 8670 CAGGTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATT 8729 Query 16305 CTGGGCGGTACCCTGACCAGCACCACCAGCCAGTCAGGC---GGCGGCGCTTTTGCCCTG 16361 |||||||| |||||||||| |||| | | | ||| || || | ||||| Sbjct 8730 CTGGGCGGCACCCTGACCA-----CCCAGGCGGAC-GGCAAGAGCAGCACCAACGCCCTA 8783 Query 16362 GGCCAGGTACATAACGAGGTTCGGCACGACTTGCTGGCATCCGATGCCCGCCAATTGGCG 16421 ||| | || |||||||| || || ||||| || || |||||| || |||| Sbjct 8784 GGCAACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGCGATGCGGTGCAGCTGGCC 8843 Query 16422 GCAACGTTGTCCCGCGATCTGCT 16444 | ||| || |||| || ||||| Sbjct 8844 GGCACGCTGACCCGTGACCTGCT 8866 Score = 109 bits (120), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 17323 CCGCCTGGATACCATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTAC-- 17380 ||| ||||| ||||| | | ||||| | || || ||||| ||||| |||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 17381 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 17440 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 9774 GCGGCTGCGCGAGAA--CGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 17441 GGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 17500 || ||||| |||||||||||||| |||||||| |||||| | | |||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 17501 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17548 |||| | | | ||||| || |||||||||||||| |||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGG 9939 Score = 93.3 bits (102), Expect = 1e-14 Identities = 300/459 (65%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 7793 CGCGTTCGGCGACATCGACGCTTTCGTCGATCTGTCGGTCGAGCAGTACGGCACCAAGCT 7852 |||||| | ||| ||| | || || | || |||||| | ||||||||||| || | Sbjct 645 CGCGTTTGTCGATATCCAGGCATTGATTGACCTGTCGATTGAGCAGTACGGGGTAAAACG 704 Query 7853 TGGAGGCAAGAAAGGGAACGTCTCCCTCCTGAGCTTCGATGGCCGCTACATGATCAAGAA 7912 ||| |||| ||||| || || | || ||| ||||||||||||| | | | | Sbjct 705 TGGCGGCAGAAAAGGCAATGTGACGCTGTATTCCTTTGATGGCCGCTACAAGGTTATGCG 764 Query 7913 AGCGATCCAGGAAACCATCCAGTTCGACGAGCGTATCCAGGCCGCCCGCGAGCTGATCGA 7972 || || ||||| ||| || || |||||||||||||||||| | |||| || Sbjct 765 CGCCATGCAGGACCGCATTACCTTTGATGAGCGTATCCAGGCCGCCAAGGCATTGATTGA 824 Query 7973 GGAATGCCTTCGCGACTGGACCCAG--GGCGCCAGGCCCGAAG-TGGTCACC-CTGGTAA 8028 || ||| | || ||||| ||| |||| ||||| || || | || | | | Sbjct 825 TGATTGCATGACGGAGTGGACGCAGAATGCGC---GCCCGGAGCTGCTGGCCATTATTGA 881 Query 8029 CCA-ACGCTTTCCGCACTGACACGAAGGGCGAAATCCGTACCGCCCGAGTGCTCGCCCTG 8087 ||| || |||| ||| |||| ||| || || || | | ||||| | || ||| Sbjct 882 CCAGGCGTTTTC--CACCGACAAGAACGGTGATATTAATCCGGCCCGTATTCTGCAGCTG 939 Query 8088 CGCCGCCTGGACATCCAAGACGAGCGCTGGCTGCGAGCCATGAATGCGATTGGCGACGCC 8147 || |||| || || ||| ||||||| |||| || ||| ||||| | | || || Sbjct 940 CGTCGCCATGATATTACCGACCCGCGCTGGTTGCGGGCGATGGATGCGCTGGCGGAAGCG 999 Query 8148 TGCCAGGCGGTGGGTTCCAAGGCCTACATCCGCGTCTATGAACGGGTCGGCGACAGCGAC 8207 |||| |||| | |||| |||||| ||| | || || || ||| ||| | || Sbjct 1000 GTGCAGGTGGTGAGCAGCAAGAGCTACATTCGCCTTTACGAGCGTATCGACGAGACCGGG 1059 Query 8208 CAGTACCAGCAGATCAGCCTCGATATGGCGGGGGTGTGA 8246 || || | || | | || ||||| || ||||||||| Sbjct 1060 CAATATCGGCCGCTGTCGCTGGATATTGCAGGGGTGTGA 1098 >seq3855 Length=27953 Score = 136 bits (150), Expect = 9e-28 Identities = 231/331 (70%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 21008 CAACACCTATGGCTGGCTGGGGCAGTTCCCCAAGCTGCGCGAGTGGATCGGTCAGCGTGT 21067 ||| ||||| ||||||||||||||||| ||| | | || |||||| |||| ||| Sbjct 12039 CAATACCTACGGCTGGCTGGGGCAGTTTCCCGCGTTCCGGGAGTGGGTCGGCTCGCGCAG 11980 Query 21068 CATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACAAGCTCTTCGAATCGACCGT 21127 ||| || | ||| || | | |||||| |||| ||||||| || ||| || || Sbjct 11979 TATCCAGCAGATGAAGGTCTATGGCTACGCCATCAACAACAAGACCTATGAAGGCACGGT 11920 Query 21128 GGGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTCATGCA 21187 | | | | || || | ||||| ||||| ||||||| || | ||||| | || Sbjct 11919 CGCCATTACCCGCGATGATTTTGAGGATGACAATCTCGGCGCGTATAGCCCGCTGTTTCA 11860 Query 21188 GGAAATGGGGCGCGCTGCCGGCGCGCATCCCGACGAGCTGGTCTT---CGCCCTGCTCAA 21244 ||||||||| ||||| |||| ||| || || || |||||||| || |||| ||| | Sbjct 11859 GGAAATGGGCCGCGCCGCCGCCGCACAACCGGATGAGCTGGTGTTTACCGCCTTGCGC-- 11802 Query 21245 GGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAAC-TTCTTCGACACCGATCACCCGG 21303 | |||||| | |||||||||||| |||| | || || || | ||| || |||| Sbjct 11801 -GACGGCAATAAAACCGACTGCTACGACGG-CAAACCTTTTTTTGATAGCGAACATCCGG 11744 Query 21304 TCTATCCGAACGTGGATGGCACCGGCACGGC 21334 | ||||| || || || |||| |||||| || Sbjct 11743 TGTATCCCAAGGTCGACGGCAGCGGCACCGC 11713 >seq1892 Length=4253 Score = 131 bits (144), Expect = 4e-26 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 12756 ATGGCGCACCCGAAGGAAACCCGCGACGCCTTGCGCCGCGCCTATGTCCTCGACCGGCAG 12815 |||||||||||| |||||| ||||||| | |||| || |||||| | ||| | | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12816 TCCCTTGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGGAAA 12875 ||||||||| | || ||||| | ||||| | | ||| || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 12876 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCGCAATCGGCGCAGTTGCTGGCC 12935 | | || | | || ||| || |||||||||||| || | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 12936 GGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACTCAGTTCCAG 12995 || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 12996 GCCACGATGGAA 13007 ||||| ||||| Sbjct 151 ACCACGCTGGAA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119034390835200