Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq3688 578 9e-161 seq1892 107 5e-19 >seq3688 Length=22785 Score = 578 bits (640), Expect = 9e-161 Identities = 911/1305 (70%), Gaps = 23/1305 (2%) Strand=Plus/Plus Query 13374 CCGGACGGCCAGCACGAAGCCATTGCAGCACCGCGTGGTAATGCCAAGTCCACCCTGGTG 13433 ||| | ||| |||| || ||||| || || |||||||| | |||||||| || ||||| Sbjct 6451 CCGAAAGGCGAGCAGGACGCCATCGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTC 6510 Query 13434 AGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATC 13493 |||||| | || ||| | ||||| | | |||| |||||| || ||||| | | Sbjct 6511 AGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCCCTGGTGGTG 6570 Query 13494 ATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTTC 13553 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| ||| Sbjct 6571 ATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTC 6630 Query 13554 AACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGTC 13613 ||||| || ||| ||||||||| | | | ||||| ||| ||||||||||| | Sbjct 6631 AACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGCATGGGGCGCGTCTGGCAGATG 6690 Query 13614 GGCACCATCGTTACGGCGAACGATGCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGATG 13673 ||||||||| | ||| |||||| |||||| ||||| |||| ||| || | || Sbjct 6691 GGCACCATCCTGACGCGCAACGATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTG 6750 Query 13674 CGCGGTCTTCGACACGGCCCGCATCGTCCTGACCTGGTGATCGGCGACGACCTGGAGAAC 13733 ||||| || || ||||| ||| | || |||||||||||||| ||||| | |||||| Sbjct 6751 CGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGAAC 6810 Query 13734 GACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGACC 13793 |||||| | || |||| |||||| |||||||||||||||||||||||||||| || ||| Sbjct 6811 GACGAGCAGGTACGCAACCCGGACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACC 6870 Query 13794 GTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGCACCATCCTT 13853 || ||| | || || || | || | | || ||| || |||||||||||||| Sbjct 6871 GTGCTGCCGCTGGGTGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTG 6930 Query 13854 CACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCACTGTGGAAGC-GGCGCAAGTT 13912 || ||||||||||| | || ||| ||||| ||||| || ||| || ||||| || Sbjct 6931 CATTACGACTCGGTGTTATCACGCACCCTGAATAACCCGCTATGGCGGCAGGCGCGCTTT 6990 Query 13913 CAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGACGTGGGAAGAGCTTCT 13972 ||||| | | | |||||| | || ||||||||| ||||| ||| | Sbjct 6991 -AAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGTTGTGGGAGAGCTGGGAGCAGCGCTT 7049 Query 13973 GCTCAACTCGGACGACGAAGGGGCCGCCGCCCTGGAGTTCTACCAGGAGCNNNNNNNNNN 14032 || ||| || || || | ||| | ||| || || | | Sbjct 7050 GCGTAACCAGGGAGAGGATGCGGCG------CAGGATTTTTATACGTCACACCGTACCGA 7103 Query 14033 NNNNNNNGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAGCTCATGGT 14092 || |||||| ||| |||| | | ||| || || | || ||| Sbjct 7104 GATGGAGGAAGGCGCGGAAGTCTCCTGGTCCGCACGGCCGCTGCTGACC---CTGATGCA 7160 Query 14093 GAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCAGTCCA 14152 | || ||||| || || ||| | | || || | || | ||||| | ||| ||| Sbjct 7161 TATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTCAG 7220 Query 14153 GGGCGAGAACGCCCCGTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGC 14208 || || | || | ||| ||| |||||||| |||||||||||||| || Sbjct 7221 CGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACG 7276 Query 14209 AGTGGATGTTCTACGGCGCGTGTGACCCGTCCCTTGGCAAGCAAGGTTCCAGCCGCGACC 14268 ||||| | |||||||| || || ||||| ||| |||||| || ||||||| |||| Sbjct 7277 AGTGGCTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACC 7336 Query 14269 C--CAGCGCCATCCTGGTGGGTGGGTTCAATCGGGAAACAGGCGTCCTGGACGTGGTCGA 14326 | |||||| | ||||| ||||| || ||||| | || ||||| ||||| ||||| || Sbjct 7337 CGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGA 7394 Query 14327 GGCCGGTATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCGCCATGCAGCG 14386 || || |||||||| ||||||||| || ||| | || || || |||| Sbjct 7395 AGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAA 7454 Query 14387 GGCCTATCGCTGCCTGGTCTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCAC 14446 || || | ||| ||||| |||||| |||||||||| ||||| ||||||||||||||||| Sbjct 7455 GGAATACCACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCAC 7514 Query 14447 CGAGCTGGTGAAGCGCTCGGCCAAGGCGGGCTGCCCAGTACCTGCCCGAGCGATCACCCC 14506 ||||||| | |||||| |||| || ||| ||| || || || || || || | ||| Sbjct 7515 CGAGCTGATTAAGCGCGCGGCACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATCCC 7574 Query 14507 GCACGCCGACAAGCTGCTGCGCATCGAAAGTCTCCAGCCGCACATGGCCAACGGCCTAAT 14566 || |||||||||||| |||| ||||| | || ||||| || |||| ||||| || || Sbjct 7575 CCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTAT 7634 Query 14567 CCGTCTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGCCACTTCCCGGCCGCAGA 14626 ||||||||| | ||||||||| ||| ||| |||||||||||||| || ||| || Sbjct 7635 CCGTCTGCACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCCGA 7694 Query 14627 CCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGATGCTCGC 14671 ||| ||||| ||||| ||||| ||||| |||||||||| ||| || Sbjct 7695 CCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGCTGGC 7739 Score = 147 bits (162), Expect = 5e-31 Identities = 171/227 (75%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 16722 CCGGCTGGAAACCATCTATCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTATGC 16781 ||||||||| ||||| | || ||||| | || || ||||| ||||||||||||||| | Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTAT-C 9772 Query 16782 CGCCGCATACGAGGCCAGGGAAACCCAC--CCCTACTGGATGTATGTGGCCGTCATGGAC 16839 || || | || | | | ||| | ||||||||| ||||||||| || |||||| Sbjct 9773 AGCGGC-TGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 16840 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTACCGCTGGGACGACCCG 16899 ||| |||||| ||||||||||| ||||| |||||| ||||| ||| | ||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 16900 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGCTGCCG 16946 |||| | | | | |||||||| |||||||||||||||||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCG 9938 Score = 134 bits (148), Expect = 3e-27 Identities = 596/924 (65%), Gaps = 51/924 (6%) Strand=Plus/Plus Query 14938 CATCTTGATCGAGGCCGAGCAGGGTCAACTCCAGGCTCAGGCCGAGCTGTTCATGGACAT 14997 |||| ||| ||||||||||||||| || || | |||||| || ||||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 14998 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGCAAGCGCGCTGTCCTCGG 15057 |||||| ||||||| |||||| || ||||| |||||||||||| || | || | Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGCCGCCGTTCGGTGATGCC 8089 Query 15058 CCTGGACTGGACCATCGAGCCGCCGCGCAACGCCTCGGCGGCAGAGAAGGCCGACGCGGA 15117 || |||| ||| | ||||||||| | || ||| || ||||| ||||| Sbjct 8090 GCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATGCGCAGGAAAAGGCGATGGCGGA 8149 Query 15118 GTATCTCCACGAGC---TGCTGCTC-GACCTGGAGGGCATTGAAGACCTCATGCTCGA-T 15172 | || ||| | || | || |||||| || ||||| || || |||| | Sbjct 8150 ----CGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGACT 8205 Query 15173 TGCATGGACGGCGTCGGCCACGGCTATAGCGCTATCGAGCTGGACTGGTCGCTTCAGGGG 15232 ||| |||||| | | |||||||||| | ||| | || ||| ||| | || Sbjct 8206 TGC-TGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAAACA-----GG 8259 Query 15233 CGGGAG-----TGGTTGCCGCAGGCCTTCGACCACCGGCCGCAGAGCTGGTTTCA-ACTG 15286 ||| | ||| |||| |||||| || | || ||||| ||||||| || || | Sbjct 8260 CGGAAAACATCTGGCTGCCCTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCG 8319 Query 15287 -AACCCGGACGACCAGGACGAGCTGCGCTTGCGCGATAACAGCATCGCGGGCGAGGTACT 15345 ||||| | |||| ||| | ||| || || |||| | | || | | || Sbjct 8320 CAACCC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCT 8377 Query 15346 CCAGCCGTTCGGCTGGATCATGCACAAGCCGCGTTCGCGCTCG----GGATACGTGGCGC 15401 | || || |||||| | |||| ||| || || || | || || Sbjct 8378 TAATCCCTTTGGCTGGCTGCTGCAT----CGCCATCAGGCCAAAAGCGGCTGGGTAGCCG 8433 Query 15402 GTAGCGGGCTGTTCCGGGTCGTGGCCTGGCCATACCTGTTCAAGCAC--TACTCCACGGC 15459 ||||| ||||||||||| ||| ||| | |||||||||||| | | || | || Sbjct 8434 AAAGCGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGT- 8492 Query 15460 CGACCTGGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTA-CCCGC 15518 |||||||||||| | || ||||||||||| ||||||| ||| | || | || ||| Sbjct 8493 -GACCTGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGA 8551 Query 15519 CCGGCACGCC--CGACGAAGAGAAGGTAACCCTGCTGCGAGCCGTGACCGGCCTCGGCCA 15576 | || ||| || ||||| ||| | |||||| | || || || ||| || || Sbjct 8552 CGGG---GCCAGTGAAGAAGAAAAGAACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCA 8608 Query 15577 TGCCGCAGCGGGCATCATCCCCGAGAGTATGTCTATCGACTTCCAGGAAGCGTCGAAAGG 15636 | ||| | ||||| |||| ||| | | | ||| ||| || || | | || Sbjct 8609 TAACGCCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGG 8668 Query 15637 CTCGGCCGAGCCGTTCATGGCCATGATGCGCTGGTGCGATGACTCGATGTCAAAGGCGAT 15696 || ||| |||||| | ||||||| |||||||| | | ||| |||| || Sbjct 8669 GCAGGTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCAT 8728 Query 15697 CCTGGGCGGCACGCTCACCAGCCAGACCAGCGAGTCGG--GCGGCGGCGCCTACGCCCTG 15754 ||||||||||| || |||| |||| ||| | ||| || || || ||||||| Sbjct 8729 TCTGGGCGGCACCCTGACCACCCAG----GCG-GACGGCAAGAGCAGCACCAACGCCCTA 8783 Query 15755 GGACAGGTCCATAACGAGGTGCGCCATGACCT-TCTGGCGGCGGATGCCCGCCAGCTCGC 15813 || | || |||||||| |||||||| || || | | | || ||||| ||||| || Sbjct 8784 GGCAACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGC-GATGCGGTGCAGCTGGC 8842 Query 15814 CGCGACGCTGAGTCGCGACCTACT 15837 || ||||||| || ||||| || Sbjct 8843 CGGCACGCTGACCCGTGACCTGCT 8866 Score = 89.7 bits (98), Expect = 1e-13 Identities = 299/459 (65%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 6739 CGCGTTCGGCGACATCGACGCTTTCGTCGATCTGTCGGTCGAGCAGTACGGCACCAAGCT 6798 |||||| | ||| ||| | || || | || |||||| | ||||||||||| || | Sbjct 645 CGCGTTTGTCGATATCCAGGCATTGATTGACCTGTCGATTGAGCAGTACGGGGTAAAACG 704 Query 6799 GGGAGGCAAGAAAGGGAACGTCTCCCTCCTGAGCTTCGATGGCCGCTACATGATCAAGAA 6858 || |||| ||||| || || | || ||| ||||||||||||| | | | | Sbjct 705 TGGCGGCAGAAAAGGCAATGTGACGCTGTATTCCTTTGATGGCCGCTACAAGGTTATGCG 764 Query 6859 AGCGATCCAGGAAACCATCCAGTTCGACGAGCGTATCCAGGCCGCCCGCGAGCTGATCGA 6918 || || ||||| ||| || || |||||||||||||||||| | |||| || Sbjct 765 CGCCATGCAGGACCGCATTACCTTTGATGAGCGTATCCAGGCCGCCAAGGCATTGATTGA 824 Query 6919 GGAATGCCTTCGCGACTGGACCCAG--GGCGCCAGGCCCGAAG-TGGTCACC-CTGGTAA 6974 || ||| | || ||||| ||| |||| ||||| || || | || | | | Sbjct 825 TGATTGCATGACGGAGTGGACGCAGAATGCGC---GCCCGGAGCTGCTGGCCATTATTGA 881 Query 6975 CCA-ACGCTTTCCGCACTGACACGAAGGGCGAAATCCGTACCGCCCGAGTGCTCGCCCTG 7033 ||| || |||| ||| |||| ||| || || || | | ||||| | || ||| Sbjct 882 CCAGGCGTTTTC--CACCGACAAGAACGGTGATATTAATCCGGCCCGTATTCTGCAGCTG 939 Query 7034 CGCCGCCTGGACATCCAAGACGAGCGCTGGCTGCGAGCCATGAATGCGATTGGCGACGCC 7093 || |||| || || ||| ||||||| |||| || ||| ||||| | | || || Sbjct 940 CGTCGCCATGATATTACCGACCCGCGCTGGTTGCGGGCGATGGATGCGCTGGCGGAAGCG 999 Query 7094 TGCCAGGCGGTGGGTTCCAAGGCCTACATCCGCGTCTATGAACGGGTCGGCGACAGCGAC 7153 |||| |||| | |||| |||||| ||| | || || || ||| ||| | || Sbjct 1000 GTGCAGGTGGTGAGCAGCAAGAGCTACATTCGCCTTTACGAGCGTATCGACGAGACCGGG 1059 Query 7154 CAGTACCAGCAGATCAGCCTCGATATGGCGGGGGTGTGA 7192 || || | || | | || ||||| || ||||||||| Sbjct 1060 CAATATCGGCCGCTGTCGCTGGATATTGCAGGGGTGTGA 1098 >seq1892 Length=4253 Score = 107 bits (118), Expect = 5e-19 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 12123 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTATGTCCTCGACCGGCAA 12182 |||||||||||| |||||| ||||||| | ||||| || |||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12183 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTATGGCACCGCTCGCCGCTGGAAA 12242 ||||| ||| | || ||||| | ||||| | | || || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 12243 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCGCAATCGGCGCAGTTGCTAGCC 12302 | | || | | || ||| || |||||||||||| || | ||||| || | || Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 12303 GGTGGCGGACTGGAAGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACTCAGTTCCAG 12362 || || || ||||| || | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 12363 GCCACGATGGAA 12374 ||||| ||||| Sbjct 151 ACCACGCTGGAA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117677654767616