Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq3764 123 3e-23 seq2351 93.3 4e-14 >seq3764 Length=2321 Score = 123 bits (136), Expect = 3e-23 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 103763 TTATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 103822 |||| |||||||||||| ||| |||||||| |||||||||||||||||||||||||||| Sbjct 2118 TTATATGGTGGCCCCTGTTGGGTTTGAACCAACGACCAAGCGATTATGAGTCGCCTGCTC 2177 Query 103823 TAACCACTGAGCTAAGGGGCC 103843 ||||||||||||||||||||| Sbjct 2178 TAACCACTGAGCTAAGGGGCC 2198 >seq2351 Length=10305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 12082 ATATATTGAGTACCCTTAAGATGCAACTGTTCATCACGAGCGATGAACTTCATAATCTTG 12141 |||| || ||||| | || |||| | |||||| || ||||| | || ||||| ||| Sbjct 5085 ATATGCTGGGTACCGGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGTTTGATAATTTTG 5026 Query 12142 GAGTTGCCTTCCATTATTTCCATATTCTTATGG--AAGTTGAAAGTGCAGGCGAAACTCA 12199 | |||||| ||||| | ||| ||| || ||| ||| | |||||||||||| | Sbjct 5025 GCGTTGCCCTCCATCAGTTCGCG-TTC----GGCAAAGGCGAATGAGCAGGCGAAACTGA 4971 Query 12200 CATAAAAACGAATTGCTTCAAGACCATTGATGA-CATGCAAACACAGATAAAGTGCTTTC 12258 |||||||||| || ||||| || | |||| | ||| || ||||||||||| |||| Sbjct 4970 CATAAAAACGGATGGCTTCCAGCGCGTTGACGCTCAT-CAGGCACAGATAAAGCTGTTTC 4912 Query 12259 ATCAAGTCATGC 12270 ||||| ||||| Sbjct 4911 TTCAAGGCATGC 4900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505763712875520