Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq3532 183 3e-41 seq3176 143 3e-29 seq2351 143 3e-29 seq2656 82.4 8e-11 >seq3532 Length=11862 Score = 183 bits (202), Expect = 3e-41 Identities = 151/184 (82%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60697 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60756 |||||| || ||||| || ||||| | || ||||| || |||||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 60757 AGTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60816 |||| || || |||||||| || || ||||||||||||| |||||| ||||||||||| | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 60817 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCAC 60876 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 60877 CCTC 60880 | || Sbjct 11329 CTTC 11332 >seq3176 Length=18404 Score = 143 bits (158), Expect = 3e-29 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 60707 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 60766 || ||| || ||||| | |||||||| |||||||||| ||||| ||||| ||||| Sbjct 6324 CTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCG 6383 Query 60767 AACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 60826 || ||||| || || ||||||||||||| |||||||||||||||||| || | | || Sbjct 6384 CACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGC 6443 Query 60827 ATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCCTCAAT 60883 ||| ||| ||||||| || ||||| |||||||||||||||||||| || || Sbjct 6444 ATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGAT 6500 >seq2351 Length=10305 Score = 143 bits (158), Expect = 3e-29 Identities = 294/437 (67%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 139541 TTCAGCTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTT 139600 |||| ||| ||||| ||||| | ||||| | ||||| |||| ||||| ||| || Sbjct 2986 TTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTC 2927 Query 139601 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 139660 |||| || || || |||| ||||||| |||||| | || ||| | || || || Sbjct 2926 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCT 2867 Query 139661 CCGCCACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 139720 ||||| || | ||||||||||| || ||||| || || ||||| |||||||| | ||| Sbjct 2866 CCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAA 2807 Query 139721 GGAATAACACCAGTATGACGCACTTCACCTGTGCCAATCTTAGAACCTTCGGCACGAATC 139780 |||||| |||||||| ||||||| || |||| ||| |||||||| Sbjct 2806 GGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATA 2747 Query 139781 ATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAA 139840 ||| ||||||| || || || || || | || | |||| || || | | || Sbjct 2746 CGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAG 2687 Query 139841 GCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACACATGAACTAAACTGC 139900 | || || || | ||| || || |||||| | || || || || ||||| Sbjct 2686 GTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGA 2627 Query 139901 CGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGAT 139960 || ||||| ||||| || | ||| || || |||||||||||||||| ||||| Sbjct 2626 CGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTTGAAGGTAGAA 2567 Query 139961 ACTGCTTCATAAAAACG 139977 | || ||||| || || Sbjct 2566 ATCGCGTCATAGAAGCG 2550 >seq2656 Length=1220 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 69119 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 69178 |||||| | || ||||||||||| | |||||| || ||||||||| |||||||||||| Sbjct 182 TGGTGCCGGCTGCCGGAATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 241 Query 69179 ACTGAGCTAA 69188 |||||||||| Sbjct 242 ACTGAGCTAA 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534171903759360