Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq3532 192 6e-44 seq3176 154 2e-32 seq2351 145 8e-30 >seq3532 Length=11862 Score = 192 bits (212), Expect = 6e-44 Identities = 153/184 (83%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 61407 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61466 |||||| || || ||||| ||||| | || ||||| || |||||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 61467 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61526 |||| || || ||||||||||| || ||||||||||||| |||||| ||||||||||| | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 61527 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61586 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 61587 CTTC 61590 |||| Sbjct 11329 CTTC 11332 >seq3176 Length=18404 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61421 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61480 ||||| ||||| | |||||||| |||||||||| ||||| ||||| ||||| || Sbjct 6328 GTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCGCACG 6387 Query 61481 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61540 |||||||| || ||||||||||||| |||||||||||||||||| || | | ||||| Sbjct 6388 GCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGCATCC 6447 Query 61541 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61593 ||| ||||||| || ||||| ||||||||||||||||||||||| || Sbjct 6448 AACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGAT 6500 >seq2351 Length=10305 Score = 145 bits (160), Expect = 8e-30 Identities = 299/445 (67%), Gaps = 0/445 (0%) Strand=Plus/Minus Query 140647 TTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 140706 |||| ||| || || ||||| | ||||| | |||||| |||| ||||| ||| || Sbjct 2986 TTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTC 2927 Query 140707 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 140766 |||| || || || |||| ||||||| |||||| | || ||| | || || || Sbjct 2926 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCT 2867 Query 140767 CCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 140826 ||||| || | || ||||||||||| ||||| || || ||||| |||||||| | ||| Sbjct 2866 CCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAA 2807 Query 140827 GGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATC 140886 |||||| ||||||||| | ||||||| || |||| ||| |||||||| Sbjct 2806 GGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATA 2747 Query 140887 ATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGAAGCGGAA 140946 ||| ||||||| || || || ||||| | || | |||| || || | | ||| Sbjct 2746 CGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAG 2687 Query 140947 GCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGT 141006 | || || || | | || || |||||| | || || || || ||||| Sbjct 2686 GTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGA 2627 Query 141007 CGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGAT 141066 || || || ||||| || | ||| || || ||||| |||||||||| ||||| Sbjct 2626 CGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTTGAAGGTAGAA 2567 Query 141067 ACTGCTTCATAAAAACGGATAACGT 141091 | || ||||| || || | |||| Sbjct 2566 ATCGCGTCATAGAAGCGTTTGACGT 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534447090109440