Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027356.1 Length=108065 Score E Sequences producing significant alignments: (Bits) Value seq3176 125 5e-24 seq3532 93.3 3e-14 >seq3176 Length=18404 Score = 125 bits (138), Expect = 5e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 24576 ATTACATCGCCTGAGTAAATGTACGACTAATAACATCGTTCTGCTGTTCACGCGTCAGTG 24635 ||||||| | |||||| || ||||| ||||||| || | ||||||||| ||||| | Sbjct 6314 ATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCG 6373 Query 24636 CGTTAAAACGTACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGAT 24695 ||| || || || || || || ||||||||||| || || || || |||||||| || | Sbjct 6374 AGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGT 6433 Query 24696 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCCC 24755 ||| | |||||||| ||| ||||| | | ||| || || || ||||||||||| | Sbjct 6434 GTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCAC 6493 Query 24756 CTTCAAT 24762 |||| || Sbjct 6494 CTTCGAT 6500 >seq3532 Length=11862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 24589 AGTAAATGTACGACTAATAACATCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGTAC 24648 ||| || ||||| |||| || || |||||||| | |||| || ||| ||||| || Sbjct 11162 AGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACGCAC 11221 Query 24649 AGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATC 24708 || || || ||||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 11222 TGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGCATC 11281 Query 24709 CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCCCCTTC 24759 ||| ||||| | | || || || || |||||||| |||||||| Sbjct 11282 TTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTC 11332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345666482760448