Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027384.1 Length=37359 Score E Sequences producing significant alignments: (Bits) Value seq3688 316 5e-82 seq1892 107 5e-19 >seq3688 Length=22785 Score = 316 bits (350), Expect = 5e-82 Identities = 392/535 (73%), Gaps = 1/535 (0%) Strand=Plus/Plus Query 13928 CCGGACGGCCAGCACGAAGCCATTGCGGCACCGCGTGGTAATGCCAAGTCCACCCTAGTG 13987 ||| | ||| |||| || ||||| || || |||||||| | |||||||| || || || Sbjct 6451 CCGAAAGGCGAGCAGGACGCCATCGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTC 6510 Query 13988 AGCCAAATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATC 14047 ||||| | || ||| | ||||| | | |||| |||||| || ||||| | | Sbjct 6511 AGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCCCTGGTGGTG 6570 Query 14048 ATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTTC 14107 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| ||| Sbjct 6571 ATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTC 6630 Query 14108 AATCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGTC 14167 || || || ||| ||||||||| | | | ||||| ||| ||||||||||| | Sbjct 6631 AACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGCATGGGGCGCGTCTGGCAGATG 6690 Query 14168 GGCACCATCGTTACGGCGAACGATGCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGATG 14227 ||||||||| | ||| |||||| |||||| ||||| |||| ||| || | || Sbjct 6691 GGCACCATCCTGACGCGCAACGATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTG 6750 Query 14228 CGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGGTCGGCGACGACCTGGAGAAC 14287 |||||||| || ||||| ||| |||| |||||||||||| | ||||| | |||||| Sbjct 6751 CGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGAAC 6810 Query 14288 GACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGACC 14347 |||||| | || |||| |||||| |||||||||||||||||||||||||||| || ||| Sbjct 6811 GACGAGCAGGTACGCAACCCGGACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACC 6870 Query 14348 GTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTCATCATCATCGGCACCATCCTT 14407 || ||| | || || || | || | | || || || |||||||||||||| Sbjct 6871 GTGCTGCCGCTGGGTGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTG 6930 Query 14408 CACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGGAAGC-GGCGC 14461 || ||||||||||| | || ||| ||||| |||||||| ||| || ||||| Sbjct 6931 CATTACGACTCGGTGTTATCACGCACCCTGAATAACCCGCTATGGCGGCAGGCGC 6985 Score = 306 bits (338), Expect = 9e-79 Identities = 418/581 (72%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 14651 CGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTGTCCAGGGC 14710 || ||||| || || ||| | | || || | || | ||||| | ||| ||| || Sbjct 7165 CGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTCAGCGGT 7224 Query 14711 GAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGCAATG 14766 ||| | || | || ||| |||||||| |||||||||||||| || | || Sbjct 7225 GAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACGAGTG 7280 Query 14767 GATGTTCTACGGCGCGTGTGACCCGTCCCTTGGCAGGCAAGGTACCAGACGCGACCC--C 14824 | | |||||||| || || ||||| ||| |||| | || |||| || ||||| | Sbjct 7281 GCTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTC 7340 Query 14825 AGCGCCATCCTGGTGGGTGGGTTCAATCGGGAAACAGGTGTCCTGGACGTGGTCGAGGCC 14884 ||||| | ||||| ||||| || ||||| | || || || ||||| ||||| || || Sbjct 7341 AGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCG 7398 Query 14885 GGTATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCACCATGCAGCGGGCC 14944 || |||||||| ||||||||| || ||| | || || | |||| || Sbjct 7399 CAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAAGGAA 7458 Query 14945 TATCGCTGCCTGGTCTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCACCGAG 15004 || | ||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||| Sbjct 7459 TACCACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAG 7518 Query 15005 CTGGTGAAGCGCTCGGCCAAGGCAGGCTGCCCAGTACCTGCCCGAGCGATCACCCCGCAC 15064 ||| | |||||| |||| || || ||| || || || || || || | ||| || Sbjct 7519 CTGATTAAGCGCGCGGCACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATCCCCCAT 7578 Query 15065 GCCGACAAGCTGCTGCGCATCGAAAGTCTCCAGCCGCACATGGCCAACGGCCTAATCCGT 15124 |||||||||||| |||| ||||| | || ||||| || |||| ||||| || |||||| Sbjct 7579 GCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTATCCGT 7638 Query 15125 CTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGCCACTTCCCGGCCGCAGACCAC 15184 ||||| | ||||||||| ||| ||| |||||||||||||| || ||| ||||| Sbjct 7639 CTGCACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCCGACCAT 7698 Query 15185 GACGATGGCCCCGACGCCCTGCACATGCTCTGGATGCTCGC 15225 ||||| ||||| ||||| ||||| |||||||||| ||| || Sbjct 7699 GACGACGGCCCGGACGCGCTGCATATGCTCTGGACGCTGGC 7739 Score = 138 bits (152), Expect = 3e-28 Identities = 168/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 17276 CCGGCTGGAAACCATCTATCAGACCAACATGCAGTCGGCCTACATGGCTGGGCGCTAT-- 17333 ||||||||| ||||| | || ||||| | || || ||||| ||||| ||||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 17334 GCCGCCGCATACGAGGCCAGGGAAACTCATCCTTACTGGATGTATGTGGCCGTCATGGAC 17393 || || || |||| | || | || |||||| ||||||||| || |||||| Sbjct 9774 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 17394 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTACCGCTGGGACGACCCG 17453 ||| |||||| ||||||||||| ||||| |||||| ||||| ||| | ||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 17454 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGCTGCCG 17500 |||| | | | | |||||||| |||||||||||||||||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCG 9938 Score = 120 bits (132), Expect = 7e-23 Identities = 298/442 (67%), Gaps = 19/442 (4%) Strand=Plus/Plus Query 15958 AGCGGGCTGTTCCGGGTCGTGGCTTGGCCATACCTGTTCAAGCAC--TACTCCACGGCTG 16015 ||||| ||||||||||| ||| ||| | |||||||||||| | | || | || || Sbjct 8436 AGCGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCG--TG 8493 Query 16016 ACCTGGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTA-CCCGCCC 16074 ||||||||||| | || ||||||||||| ||||||| ||| | || | || ||| | Sbjct 8494 ACCTGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACG 8553 Query 16075 GGCACGCC--CGACGAAGAGAAGGTAACCCTGCTGCGAGCCGTGACCGGCCTCGGCCATG 16132 || ||| || ||||| ||| | |||||| | || || || ||| || ||| Sbjct 8554 GG---GCCAGTGAAGAAGAAAAGAACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATA 8610 Query 16133 CCGCAGCGGGCATCATCCCCGAGAGTATGTCTATCGACTTCCAGGAAGCGTCGAAAGGCT 16192 ||| | ||||| |||| ||| | | | ||| ||| || || | | || Sbjct 8611 ACGCCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGGGC 8670 Query 16193 CGGCCGAGCCGTTCATGGCCATGATGCGCTGGTGCGATGACTCGATGTCAAAGGCGATCC 16252 || ||| |||||| | ||||||| |||||||| | | ||| |||| || | Sbjct 8671 AGGTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTC 8730 Query 16253 TGGGCGGCACGCTCACCAGCCAGACCAGCGAGTCGG--GCGGCGGCGCCTACGCCCTGGG 16310 |||||||||| || |||| |||| ||| | ||| || || || ||||||| || Sbjct 8731 TGGGCGGCACCCTGACCACCCAG----GCG-GACGGCAAGAGCAGCACCAACGCCCTAGG 8785 Query 16311 ACAGGTCCATAACGAGGTGCGCCATGACCT-TCTGGCGGCGGATGCCCGCCAGCTCGCCG 16369 | || |||||||| |||||||| || || | | | || ||||| ||||| |||| Sbjct 8786 CAACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGC-GATGCGGTGCAGCTGGCCG 8844 Query 16370 CGACGCTGAGTCGCGACCTACT 16391 ||||||| || ||||| || Sbjct 8845 GCACGCTGACCCGTGACCTGCT 8866 >seq1892 Length=4253 Score = 107 bits (118), Expect = 5e-19 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 12677 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTATGTCCTCGACCGGCAA 12736 |||||||||||| |||||| ||||||| | ||||| || |||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12737 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTATGGCACCGCTCGCCGCTGGAAA 12796 ||||| ||| | || ||||| | ||||| | | || || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 12797 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCGCAATCGGCGCAGTTGCTAGCC 12856 | | || | | || ||| || |||||||||||| || | ||||| || | || Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 12857 GGTGGCGGACTGGAAGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACTCAGTTCCAG 12916 || || || ||||| || | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 12917 GCCACGATGGAA 12928 ||||| ||||| Sbjct 151 ACCACGCTGGAA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119421572590336