Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 1e-14 seq676 82.4 6e-11 seq14 82.4 6e-11 >seq10 Length=2352850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||| |||||||| | | | |||| || | |||||||| Sbjct 820087 GTGGACTCTTTTTGAATGTTGTAGTCTGAAAGAGTTCTTCCGTCCTCCAATTGTTTACCA 820028 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | |||||||||||| || || | ||| |||||||| || || ||| Sbjct 820027 GCGAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTA 819968 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | ||||| ||||| || || || | |||||| |||| || Sbjct 819967 ACATTTTCAATAGTGTCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAATGTC 819908 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 819907 TTAACAAAAATCTGCAT 819891 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||||| ||| | |||||||| ||||| || || || | ||||||||| Sbjct 820729 TCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGAGGAATTCCCTCTTTA 820670 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | |||| | ||||| | ||| || ||||| || || || Sbjct 820669 TCCTGGATCTTCGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTACTTCGAGTGTGATG 820610 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| |||||||| || ||||| || ||||| Sbjct 820609 GTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 820575 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| ||||| || || ||||||||| || | | | ||||| Sbjct 821239 ACCAAGTGGAGTGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 821180 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| || | || | |||||||||||| || || | ||||| || || | Sbjct 821179 AGTTGTTTACCAGCAAAGATCAAACGCTGTTGATCTGGAGGAATGCCCTCCTTGTCCTGG 821120 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | |||| | ||||| | ||| || ||||| || || || | ||| Sbjct 821119 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTACTTCGAGTGTGATGGTCTTG 821060 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| || || || ||||| Sbjct 821059 CCAGTTAGGGTTTTGACGAAAATCTGCAT 821031 >seq676 Length=265522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | ||||| || || || || ||||| || Sbjct 178328 CCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 178387 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| | ||||| || ||| | || || | ||| || || || || Sbjct 178388 AGAGTGCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGA 178447 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| |||| | | || | || || | ||| || || Sbjct 178448 ATTCCCTCCTTATCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCGACC 178507 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 || || || || | ||||||||||| |||||||| || || ||||| | |||||| Sbjct 178508 TCGAGGGTGATGGTCTTGCCCGTCAGCGTTTTCACGAATATCTGCATTTTTCCTAAAA 178565 >seq14 Length=2234412 Score = 82.4 bits (90), Expect = 6e-11 Identities = 231/351 (66%), Gaps = 19/351 (5%) Strand=Plus/Minus Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 |||| || | || || | || || || || || ||||| || |||||||| |||| | Sbjct 231594 TACCTGTATTCTTCTTTAGATCTAGAACATCGAAGATGTCAGCGTGCCAGGGCTCCAGGT 231535 Query 131775 ACACTGCCATTGCGCC------TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGT 131828 | | || | ||| || |||| ||||| || |||| ||||| ||| | ||| Sbjct 231534 AGATGGCAAATGCCCCAGGACGTTTG---TTACCACCCTGATCAACATAACGTGCTGTGT 231478 Query 131829 TGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGC----TCTTA 131884 | ||||| || || | ||||||| | | || |||| | |||||||||| | || Sbjct 231477 TATTGTAAACACGAAGCATGGGCACAAGCCCATTGGATATGCCATTGGTGCCAGCTATTC 231418 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTA 131944 |||| || ||||||||||| |||||| || | |||||| || || | |||| Sbjct 231417 GTGTA----CCCTTGGCTCTGATGCAGTGAACATTAACTCCAATGCCACCAGCTGATTTG 231362 Query 131945 GAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGC-GGCAAT 132003 || ||||| || | | || |||| ||||| || || | |||||| | | || | Sbjct 231361 CTTATCAGTGCACACCTCTTGAGGGTGTCGTAGATGCCCTCGATACTGTCCTCAGTCAGT 231302 Query 132004 GTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAA 132054 ||| | | ||| || |||| |||||| | |||| |||||| || Sbjct 231301 GTC-AGCAGAAAACAGCTCGACATCTGTTGTCTACCAGTGCAGGCTGAGAA 231252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424913850172416