Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq3850 349 3e-91 seq2703 188 7e-43 seq2373 89.7 5e-13 >seq3850 Length=8799 Score = 349 bits (386), Expect = 3e-91 Identities = 309/386 (80%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 57689 ATGGCGCTCCAGTCTTCCCGACCGCGGCCTGCGGCCCGCGCCAGGTTATAAACTTCACGG 57748 ||||| ||||||| | || || || || ||||| |||||| |||| || ||||| || Sbjct 2750 ATGGCCGTCCAGTCCTGGCGTCCACGCCCGGCGGCGCGCGCCTGGTTGTACACTTCGCGT 2691 Query 57749 GAGGCGGCGCCGAGCGGCATCGGTACGTGCAGTTGATTGGCGACATCCAACGCGATGCCA 57808 | | | ||||||||||||||||| ||||| |||||||| || || |||| ||| ||||| Sbjct 2690 GCGACCGCGCCGAGCGGCATCGGAACGTGAAGTTGATTCGCCACGTCCAGCGCTATGCCT 2631 Query 57809 AGATCTTTGTGCGCCAGATCGATCATGAAGGCGGGAGACAGATCTCCTTTCATCACTTTA 57868 | ||| |||||||||| |||||||||||||||||| | ||||| ||||||| |||||| Sbjct 2630 AAATCCTTGTGCGCCAAATCGATCATGAAGGCGGGGGTGAGATCGCCTTTCAGCACTTTG 2571 Query 57869 TTCGGCCAGGTGGTGGTGAAATGCCCTTTGCCTGCGGCAGTGCCGCTCATCACTTTTAAA 57928 || ||||||| ||| || || || ||||||||||| | ||||||||||||| || | | Sbjct 2570 TTGGGCCAGGAGGTCGTAAAGTGGCCTTTGCCTGCCGGGGTGCCGCTCATCAGGTTGAGA 2511 Query 57929 GCCACGTCGAAGGAAAGCCCCAGCGCTTCACACAGCACGGCGGCTTCGGCGGAGAGCGCA 57988 || || ||||| || ||||| || |||||||||||| |||||||| ||||| || || Sbjct 2510 GCGACATCGAAAGAGAGCCCGAGTGCTTCACACAGCGTCGCGGCTTCTGCGGATAGGGCG 2451 Query 57989 TTTAGCGCAATACTCATGTAGTTGTTGATCAGTTTTACGCGAATACCCATTCCCGGGCCG 58048 || || || || ||||||||||||||||| || || || ||||| ||||| || || ||| Sbjct 2450 TTGAGTGCGATGCTCATGTAGTTGTTGATGAGCTTGACCCGAATGCCCATGCCAGGACCG 2391 Query 58049 CCGGTGTTGACCAGCTCATTACCCAT 58074 |||| || ||||||||||| ||||| Sbjct 2390 CCGGCATTCACCAGCTCATTGCCCAT 2365 >seq2703 Length=20104 Score = 188 bits (208), Expect = 7e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 || |||| || ||||| || || |||||||| ||||| |||||||| | || ||||| | Sbjct 16565 GCTCGCTGCAACTGATCAAGGATCACGGCTGCAAAGCCGGGCTGGTGCTGAATCCGGCGA 16624 Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196 |||||||||||| || ||||| || ||||| || ||||| | || ||| ||||||| | Sbjct 16625 CGCCGCTCAGTTGCCTTGATTATGTAATGGATAAGTTGGATATCATTCTGTTGATGTCGG 16684 Query 58197 TGAACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAG 58256 | || || ||||| ||||| || ||||||||||| ||| | ||||| ||||| | | Sbjct 16685 TCAATCCTGGCTTTGGCGGGCAATCTTTTATTCCCGGCACGTTAGATAAGCTGCGTCAGG 16744 Query 58257 TGCGTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGA 58316 |||| | ||||| |||| | ||| || |||||||| ||||||||||| ||||| || | Sbjct 16745 TGCGCCAACGCATCGATGAGAGCGGCTATGACATTCGACTGGAAGTGGATGGCGGTGTAA 16804 Query 58317 AGGTGAACAATATCGGCGAGATCGCGC 58343 | || | || || | |||| |||| Sbjct 16805 AAGTCGATAACATTGCTCAGATTGCGC 16831 >seq2373 Length=3101 Score = 89.7 bits (98), Expect = 5e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 59615 ATGCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTCG 59674 |||| ||||||| ||| |||||||||||||||| ||||||| ||| || | ||||||| Sbjct 1496 ATGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCATAGGTTCG 1555 Query 59675 AATCCTGTAGGGTGTACCA 59693 |||||| ||||| |||||| Sbjct 1556 AATCCTATAGGGCGTACCA 1574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471218226416640