Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14 196 6e-45 >seq14 Length=2234412 Score = 196 bits (216), Expect = 6e-45 Identities = 802/1246 (64%), Gaps = 34/1246 (3%) Strand=Plus/Minus Query 110365 GAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAG 110424 ||||||||||||||| ||||| | ||| || ||| || | | |||||| || | ||| Sbjct 232949 GAGATAGTACATCCCAGTCTTCAATCCAGCTTCCCAACCGAAGAAATGCATGGACGTGAG 232890 Query 110425 CTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAG 110482 ||| |||||||| ||||| | || | ||| |||| | || || || Sbjct 232889 CTTCTCAGGGGTTGGACTGGCCATGTGAACATTGGTCGACTGGGACT--GATCGATAAAA 232832 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGA-CATCCTTCATCTTAATTTCCCAAACTGTGCG 110541 ||| || | || ||||| | | || |||||| | ||| ||||| ||||| | Sbjct 232831 GCCCCTCGATCAGCAGCCATTTTCAGGATCATCCT-CTGGGGAATCTCCCAGACTGTTCT 232773 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 || || |||||| || |||| || | |||| ||||||| || ||| || Sbjct 232772 GTACAGTGCCTTGATGTCTGCTGGTATTTTCTCGATACTCTGGATCGA---CCCATTGTT 232716 Query 110602 CACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658 | | || | ||| |||||| || | | ||||||| | | ||||||| || | Sbjct 232715 CGCTATTATCAGATTCTTCATGTCGTCGTCCCAGAGATCGCGTTCAGTGAGGTCCTTCAG 232656 Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 ||| || ||||| | || ||||| | || | || ||||||||| | Sbjct 232655 GAGATGGGGATTGACGACCTGGAATTCACCAGACAGCACGCGCCTGGAGTAGATGTTGCT 232596 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 ||||| || || | | || || ||||||| ||| || || || || ||||||||||| Sbjct 232595 GGTGTAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGATGCTGTTGGCAT 232536 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT----CCTTGAGAA 110834 |||||||| | ||| ||| | ||||| | |||| || ||||||| Sbjct 232535 TGGTGCCAGTAGCAGAGAGTTCCT--GACCC--CGTGTTGAGATATTTTCTCCTTGAGTT 232480 Query 110835 CATCCCAGTCGTAGTTGAGCTT----GGTTTCACCTTCCCACATGTCAAACTGAAGCACC 110890 | ||||||| || || || ||| | || |||||||||| |||| || | Sbjct 232479 TAGCCCAGTCCCAG---AGGTTTGTCGGTGTGACAC-CCCACATGTCGTACTGGAGGATG 232424 Query 110891 CCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA 110950 || ||| | || || || | | || || || | ||| | ||| || | |||| Sbjct 232423 CCCTGGCTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTCA 232364 Query 110951 CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTG 111010 ||| |||||||||| | | || | ||| || ||||| | || | | || | Sbjct 232363 CAGGATGCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTGG 232304 Query 111011 GCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACA 111070 || ||||| || |||| || || || | ||| |||| || ||||| ||||| Sbjct 232303 GCCTCATCACTGTCGAATGGATAACGCATCAGTAGGAATGCATCTGCCAGACCCTGAACT 232244 Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAA 111130 || | || || || | ||||| ||| || || || || |||||| ||||| || Sbjct 232243 CCAATTCCCATGGGACGGTGTCTCATGTTGGAGACTCTTGCCTCCTCAACTGGATAGTAA 232184 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATT-TCATGAAGTT 111188 || ||| ||||| | || |||||| |||| |||| ||||| || | || ||| ||| Sbjct 232183 TTGACGTCGATGACCCTGTCGAGATTTCTGGTGACAA-CTTTGACGACTGTCTTGA-GTT 232126 Query 111189 TTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 111248 | || | ||| | || || || || ||| || | | || || ||||||| Sbjct 232125 TGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTATCGATGCCA 232066 Query 111249 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGG 111308 ||||||| ||||| ||||| | |||||| | || || || || |||||| Sbjct 232065 AATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGCACAAGTTGC 232006 Query 111309 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368 | || || || || | ||||| || || ||| ||||||| ||||||||||| | Sbjct 232005 TGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCATCCTTGTACA 231946 Query 111369 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGG 111428 |||||||||| || || ||||| ||||| | ||||| || |||| | || || Sbjct 231945 GCATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGTCCACAGCTCACGGG 231886 Query 111429 CTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 |||| || || || ||| || ||||| |||||||||||||||| || || || Sbjct 231885 CTGGCAC-TTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGTACAGCTTATCGAAT 231827 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 111547 ||||||||| | ||| |||| ||||| || || || || | | | ||| || Sbjct 231826 TCCTCACCCCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACATCAAACTCCAGGGA 231767 Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 || || ||| || || |||||||| | || || |||||||||| Sbjct 231766 CCGTCTGCCTTGACACGTTTCATGAACAAATCGGGTATCCACAGGG 231721 Score = 183 bits (202), Expect = 4e-41 Identities = 587/898 (65%), Gaps = 22/898 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||| || || | | || || ||||||| ||| || || || || Sbjct 776160 GTAGATGTTGCTGGTGTAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGA 776101 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT- 110825 ||||||||||||||||||| | ||| ||| | ||||| | |||| || Sbjct 776100 TGCTGTTGGCATTGGTGCCAGTAGCAGAGAGTTCCT--GACCC--CGTGTTGAGATATTT 776045 Query 110826 ---CCTTGAGAACATCCCAGTCGTAGTTGAGCTT----GGTTTCACCTTCCCACATGTCA 110878 ||||||| | ||||||| || || || ||| | || |||||||||| Sbjct 776044 TCTCCTTGAGTTTAGCCCAGTCCCAG---AGGTTTGTCGGTGTGACAC-CCCACATGTCG 775989 Query 110879 AACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938 |||| || | || ||| | || || || | | || || || | ||| | || Sbjct 775988 TACTGGAGGATGCCCTGGCTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCT 775929 Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 | || | ||||||| |||||||||| | | || | ||| || ||||| | Sbjct 775928 TGGGCGAGTTCACAGGATGCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATG 775869 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || | | || ||| ||||| || |||| || || || | ||| |||| || Sbjct 775868 TTGAGTTTCTGGGCCTCATCACTGTCGAATGGATAACGCATCAGTAGGAATGCATCTGCC 775809 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| ||||| || | || || || | ||||| ||| || || || || |||| Sbjct 775808 AGACCCTGAACTCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACTCTTGCCTCCTCA 775749 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GAT 111177 || ||||| |||| ||| ||||| | || |||||| |||| |||| ||||| || Sbjct 775748 ACTGGATAGTAATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACAA-CTTTGACGAC 775690 Query 111178 T-TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 | || ||| |||| || | ||| | || || || || ||| || | | | Sbjct 775689 TGTCTTGA-GTTTGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGACTG 775631 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | || |||||||||||||| ||||| ||||| | |||||| | || || | Sbjct 775630 CTATCGATGCCAAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGG 775571 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || |||||| | || || || || | ||||| || || ||| ||||||| | Sbjct 775570 TGCACAAGTTGCTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGG 775511 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||||||||| ||||||||||| || || ||||| ||||| | ||||| || ||| Sbjct 775510 CATCCTTGTACAGCATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGTCC 775451 Query 111417 AAACATCGGCGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 111475 | | || |||||| || || || ||| || ||||| |||||||||||||||| Sbjct 775450 ACAGCTCCCGGGCTGGCAC-TTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGTAC 775392 Query 111476 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 111535 || || || ||||||||| | ||| |||| ||||| || || || || | Sbjct 775391 AGCTTATCGAATTCCTCACCCCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACATC 775332 Query 111536 AGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 ||| ||| |||| || || || || |||||||| | || || |||||||||| Sbjct 775331 AGACTCCAGGGACCGTCTGCCAGGACACGTTTCATGAACAAATCGGGTATCCACAGGG 775274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628000849612800