Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14 196 6e-45 seq3099 113 6e-20 >seq14 Length=2234412 Score = 196 bits (216), Expect = 6e-45 Identities = 808/1258 (64%), Gaps = 26/1258 (2%) Strand=Plus/Minus Query 117839 GAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC-AGGCATACATATGCATTGAGGACA 117897 ||| ||||||||||| ||||| | || |||||| | | | | |||||| || | | Sbjct 232949 GAGATAGTACATCCCAGTCTTCAATCCA-GCTTCCCAACCGAAGAAATGCATGGACGTGA 232891 Query 117898 ACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGC 117957 ||| |||||||||| ||||| | || | ||||| |||||||| || Sbjct 232890 GCTTCTCAGGGGTTGGACTGGCCATGTGAACATTGGTCGACTGGGACTGATCGATAAAAG 232831 Query 117958 GTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTCC 118014 || ||||| || ||||| | ||| | || ||| | || ||||| || || | Sbjct 232830 CCCCTCGATCAGCAGCCATTT---TCAGGATCATCCTCTGGGGAATCTCCCAGACTGTTC 232774 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 |||| || ||| || || |||| || | | ||||| | ||||| || ||| | Sbjct 232773 TGTACAGTGCCTTGATGTCTGCTGGTATTTTCTCGATACTCTGGATCGACCCATTGTTCG 232714 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 | || |||| |||||| || | ||||||| | | |||| |||| || || Sbjct 232713 CTATTATCAGATTCTTCATGTCGTCGTCCCAGAGATCGCGTTCAGTGAGGTCCTTCAGGA 232654 Query 118135 GATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCG 118194 |||| |||||| || || ||||| | || ||| || ||||| ||| | | Sbjct 232653 GATGGGGATTGACGACCTGGAATTCACCAGACAGCACGCGCCTGGAGTAGATGTTGCTGG 232594 Query 118195 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 118254 |||| ||||| | | ||| |||||||||| ||| |||||||| || ||||| ||||| | Sbjct 232593 TGTAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGATGCTGTTGGCATTG 232534 Query 118255 GTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCC 118314 |||||| || || ||| | || || | || || |||||||| ||| Sbjct 232533 GTGCCAGTAGCAGAGAGTTCCTGACCCCGTGTTGAGATATTTTCTCCTTGAGTTTAGCCC 232474 Query 118315 AGTCGTAGTTGAGCTTTGTC----TCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||| || || |||||| | | | |||||| || |||||||||| || ||| Sbjct 232473 AGTCCCAG---AGGTTTGTCGGTGTGACACC-CCACATGTCGTACTGGAGGATGCCCTGG 232418 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430 ||||||| || | | ||||| || | |||| | | || | ||| || Sbjct 232417 CTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTCACAGGAT 232358 Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 118490 ||||| ||||| | | || | || || || || | || | | || |||||| Sbjct 232357 GCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTGGGCCTCA 232298 Query 118491 TCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 || || || | || ||| || | ||| |||| || ||||| || || || | Sbjct 232297 TCACTGTCGAATG-GATAACGCATCAGTAGGAATGCATCTGCCAGACCCTGAACTCCAAT 232239 Query 118550 GCCAATTGGGCGATGTCTCATATT--AGACTTCCGAGCGGTCTCCACGGGATAAAAATTC 118607 || || || || |||||||| || ||||| | || ||| || ||||| |||| Sbjct 232238 TCCCATGGGACGGTGTCTCATGTTGGAGACT--CTTGCCTCCTCAACTGGATAGTAATTG 232181 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT-TCATGAAGCTTTTC 118666 ||||| ||||| | |||||| |||||||||| || || | || ||| | || || Sbjct 232180 ACGTCGATGACCCTGTCGAGATTTCTGGTGACAACTTTGACGACTGTCTTGA-GTTTGTC 232122 Query 118667 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | | ||| | | || || || ||| || | | || || || |||| ||| Sbjct 232121 GAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTATCGATGCCAAATT 232062 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 || |||| ||||| | |||||| | || || ||||||||||| | Sbjct 232061 GCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGCACAAGTTGCTGCA 232002 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 || || || || | |||||| ||||| || || |||| || ||||||||||| ||||| Sbjct 232001 TTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCATCCTTGTACAGCAT 231942 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG 118906 ||| || || || ||||| ||| ||| | ||||| || |||| | || ||||| Sbjct 231941 GTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGTCCACAGCTCACGGGCTGG 231882 Query 118907 CACAGTGGCG-TTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 ||| || || ||| || |||| ||||||||||||||||| || || || || | Sbjct 231881 CAC-TTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGTACAGCTTATCGAATTCCT 231823 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 ||||| | || |||| ||||| || | ||||| | | | ||| |||| Sbjct 231822 CACCCCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACATCAAACTCCAGGGACCGT 231763 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 119083 | ||| || || |||||||| | || || ||||| || || |||| || || || Sbjct 231762 CTGCCTTGACACGTTTCATGAACAAATCGGGTATCCACAGGGCGTAGAACAGCTCACG 231705 Score = 163 bits (180), Expect = 4e-35 Identities = 590/911 (65%), Gaps = 18/911 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||| | | ||| |||||||||| ||| |||||||| || Sbjct 776159 TAGATGTTGCTGGTGTAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGAT 776100 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||| ||||| ||||||| || || ||| | || || | || || ||| Sbjct 776099 GCTGTTGGCATTGGTGCCAGTAGCAGAGAGTTCCTGACCCCGTGTTGAGATATTTTCTCC 776040 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTC----TCCCCCTGCCACATATCAAACTG 118357 ||||| ||||||| || || |||||| | | | |||||| || |||| Sbjct 776039 TTGAGTTTAGCCCAGTCCCAG---AGGTTTGTCGGTGTGACACC-CCACATGTCGTACTG 775984 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 |||||| || ||| ||||||| || | | ||||| || | |||| | | || Sbjct 775983 GAGGATGCCCTGGCTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCTTGGGC 775924 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 | ||| || ||||| ||||| | | || | || || || || | || | Sbjct 775923 GAGTTCACAGGATGCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATGTTGAG 775864 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGAC 118536 | || |||||| || || || | || ||| || | ||| |||| || |||| Sbjct 775863 TTTCTGGGCCTCATCACTGTCGAATG-GATAACGCATCAGTAGGAATGCATCTGCCAGAC 775805 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT--AGACTTCCGAGCGGTCTCCAC 118594 | || || || | || || || || |||||||| || ||||| | || ||| || Sbjct 775804 CCTGAACTCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACT--CTTGCCTCCTCAAC 775747 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT-T 118653 ||||| |||| ||||| ||||| | |||||| |||||||||| || || | | Sbjct 775746 TGGATAGTAATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACAACTTTGACGACTGT 775687 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 | ||| | || ||| | ||| | | || || || ||| || | | || | Sbjct 775686 CTTGA-GTTTGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTA 775628 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | || |||| ||| || |||| ||||| | |||||| | || || |||| Sbjct 775627 TCGATGCCAAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGC 775568 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 ||||||| | || || || || | |||||| ||||| || || |||| || |||| Sbjct 775567 ACAAGTTGCTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCAT 775508 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 ||||||| |||||||| || || || ||||| ||| ||| | ||||| || |||| | Sbjct 775507 CCTTGTACAGCATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGTCCACA 775448 Query 118894 CATCGGCAGCTGGCACAGTGGCG-TTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGG 118952 || |||||||| || || ||| || |||| ||||||||||||||||| || Sbjct 775447 GCTCCCGGGCTGGCAC-TTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGTACAGC 775389 Query 118953 GCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGA 119012 || || || |||||| | || |||| ||||| || | ||||| | ||| Sbjct 775388 TTATCGAATTCCTCACCCCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACATCAGA 775329 Query 119013 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 119072 ||| |||| | || || || |||||||| | || || ||||| || || || Sbjct 775328 CTCCAGGGACCGTCTGCCAGGACACGTTTCATGAACAAATCGGGTATCCACAGGGCGTAG 775269 Query 119073 AAGAGATCCCG 119083 || || || || Sbjct 775268 AATAGCTCACG 775258 >seq3099 Length=8203 Score = 113 bits (124), Expect = 6e-20 Identities = 255/377 (68%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||| ||||| || || || || || | || |||||| | ||| ||||| || Sbjct 7056 CTGACGGTCAAAACGGCCCGGACGCAGCAATGCAGGGTCAAGCACGTCAGGACGGTTGGT 6997 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 || || || || | ||||| | | ||||| |||||||||||| || | || Sbjct 6996 GGCGGCAATCACGATAATGCCTTCATTGCCTTCAAAACCATCCATCTCAACCAGCATCTG 6937 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCA-GGCATACCACCCGCACTGCGTTGCTTAC 14237 || | ||||||||| |||||||||| || || | |||||||| ||||| || Sbjct 6936 GTTCAGGGTTTGTTCACGTTCATCATGACCACCGCCCA-GACCCGCACCACGTTGGCGAC 6878 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGG------TTGATTTTCACGGGCAA 14291 ||||||| || |||||||| ||||| | |||||| || || ||||| | || Sbjct 6877 CGACGGCATCGATTTCATCAATGAAGATGATACAAGGCGCGGCTT--TTTTCGCCTGC-- 6822 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 || || || || ||||| | |||||||||||||| ||||| || ||||| | | Sbjct 6821 --TCGAACATGTCACGCACACGAGATGCACCGACACCCACGAACATTTCAACAAAGTCAG 6764 Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 ||||| || | || ||| || || || | |||||| || || || ||| || ||| Sbjct 6763 AACCGGAA-ATGGTGAAGAATGGCACCTTCGCTTCACCGGCAATCGCCTTGGCAAGCAGG 6705 Query 14411 GTCTTCCCCGTCCCTGG 14427 || || || || || || Sbjct 6704 GTTTTACCTGTTCCCGG 6688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618404525614080