Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14 132 6e-26 seq3099 113 5e-20 >seq14 Length=2234412 Score = 132 bits (146), Expect = 6e-26 Identities = 302/452 (67%), Gaps = 2/452 (0%) Strand=Plus/Plus Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 ||||||||| || || || ||||||||||||||||| || | ||| | ||| | Sbjct 231818 GGGTGAGGAATTCGATAAGCTGTACACAAAGTACGAGGAGGAGGCTCGTTACAA-GCGTC 231876 Query 104869 G-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 |||||||| || |||||| ||| ||||| | ||| ||| |||||||| || | Sbjct 231877 AAGTGCCAGCCCGTGAGCTGTGGACAGCAATTCTAATGTCACAAGTTGAGACTGGAACTC 231936 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | |||||||| ||||| || ||||| ||| || ||||| ||||| | || | Sbjct 231937 CCTACATGCTGTACAAGGATGCCTGCAACAGGAAATCCAATCAGAAGAACCTTGGAACAA 231996 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 | || | ||| | || || || ||| | || | | | ||||| |||| Sbjct 231997 TAAAATGCAGCAACTTGTGCACCGAGATCGTTGAGTACTCGAGCCCCGATGAAGTTGCTG 232056 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || || | ||||| || || || || || ||||||||||| || ||||| | || Sbjct 232057 TCTGCAATTTGGCATCGATAGCAGTCAACATGTTTGTGGATCCAGTGAAGAAGACCTATG 232116 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | || |||||| | ||| ||| |||||||| ||| || |||| || || | Sbjct 232117 ACTTCGACAAACTCAAGACAGTCGTCAAAGTTGTCACCAGAAATCTCGACAGGGTCATCG 232176 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | |||| || || |||||| || | || || |||||||||||||| || | Sbjct 232177 ACGTCAATTACTATCCAGTTGAGGAGGCAAGAGTCTCCAACATGAGACACCGTCCCATGG 232236 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTC 105259 | | || ||||||||||| || |||| |||| Sbjct 232237 GAATTGGAGTTCAGGGTCTGGCAGATGCATTC 232268 Score = 132 bits (146), Expect = 6e-26 Identities = 302/452 (67%), Gaps = 2/452 (0%) Strand=Plus/Plus Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 ||||||||| || || || ||||||||||||||||| || | ||| | ||| | Sbjct 775371 GGGTGAGGAATTCGATAAGCTGTACACAAAGTACGAGGAGGAGGCTCGTTACAA-GCGTC 775429 Query 104869 G-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 |||||||| || |||||| ||| ||||| | ||| ||| |||||||| || | Sbjct 775430 AAGTGCCAGCCCGGGAGCTGTGGACAGCAATTCTAATGTCACAAGTTGAGACTGGAACTC 775489 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | |||||||| ||||| || ||||| ||| || ||||| ||||| | || | Sbjct 775490 CCTACATGCTGTACAAGGATGCCTGCAACAGGAAATCCAATCAGAAGAACCTTGGAACAA 775549 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 | || | ||| | || || || ||| | || | | | ||||| |||| Sbjct 775550 TAAAATGCAGCAACTTGTGCACCGAGATCGTTGAGTACTCGAGCCCCGATGAAGTTGCTG 775609 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || || | ||||| || || || || || ||||||||||| || ||||| | || Sbjct 775610 TCTGCAATTTGGCATCGATAGCAGTCAACATGTTTGTGGATCCAGTGAAGAAGACCTATG 775669 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | || |||||| | ||| ||| |||||||| ||| || |||| || || | Sbjct 775670 ACTTCGACAAACTCAAGACAGTCGTCAAAGTTGTCACCAGAAATCTCGACAGGGTCATCG 775729 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | |||| || || |||||| || | || || |||||||||||||| || | Sbjct 775730 ACGTCAATTACTATCCAGTTGAGGAGGCAAGAGTCTCCAACATGAGACACCGTCCCATGG 775789 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTC 105259 | | || ||||||||||| || |||| |||| Sbjct 775790 GAATTGGAGTTCAGGGTCTGGCAGATGCATTC 775821 >seq3099 Length=8203 Score = 113 bits (124), Expect = 5e-20 Identities = 285/426 (67%), Gaps = 22/426 (5%) Strand=Plus/Minus Query 9475 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9534 || ||||| ||| || || |||||| || ||| || | || ||| ||||| || Sbjct 7101 CAGGATCTGCTCACGACCACGAACATCCGGCAGACTAACCACTACCTGACGGTCAAAACG 7042 Query 9535 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9594 || ||||| || | || ||||| | ||| || || || ||||| || || | Sbjct 7041 GCCCGGACGCAGCAATGCAGGGTCAAGCACGTCAGGACGGTTGGTGGCGGCAATCACGAT 6982 Query 9595 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9651 ||| ||| ||||| ||||||||||||||||| || | ||||| | ||||| Sbjct 6981 AATGCCT---TCATTGCCTTCAAAACCATCCATCTCAACCAGCATCTGGTTCAGGGTTTG 6925 Query 9652 TTCCCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9710 ||| |||||||||| | || | ||| |||| ||||| || |||||||| | Sbjct 6924 TTCACGTTCATCATGACCACCGCCCA-GACCCGCACCACGTTGGCGACCGACGGCATCGA 6866 Query 9711 TCTCATCAATGAAGACGATGCATGG------TTGATTTTCGCGAGCGACTTCAAAGAGAT 9764 | ||||||||||||| ||| || || || ||||||| || || || | | Sbjct 6865 TTTCATCAATGAAGATGATACAAGGCGCGGCTT--TTTTCGCCTGC----TCGAACATGT 6812 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || ||||| || || ||||| || ||||| || ||||||| | ||||| || Sbjct 6811 CACGCACACGAGATGCACCGACACCCACGAACATTTCAACAAAGTCAGAACCGGAA-ATG 6753 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || ||| || || || | |||||| ||||| || ||| || || || ||||| || Sbjct 6752 GTGAAGAATGGCACCTTCGCTTCACCGGCAATCGCCTTGGCAAGCAGGGTTTTACCTGTT 6693 Query 9884 CCTGGC 9889 || ||| Sbjct 6692 CCCGGC 6687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583231870264320