Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 120 3e-22 seq320 87.8 2e-12 >seq14 Length=2234412 Score = 120 bits (132), Expect = 3e-22 Identities = 210/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 53321 CAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAG 53380 |||||||| ||||| || ||| || | |||| || ||| ||||| ||||||||||| Sbjct 774469 CAGATGTCCAGCTGTTTTCTGCTGACAATGACTGAGGACAGTATCGAGGGCATCTACGAC 774528 Query 53381 ACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG 53440 || |||||| |||||| | || ||||| | |||||| | || || | || || Sbjct 774529 ACCCTCAAGAGGTGTGCACTGATAAGCAAGTCAGCTGGTGGTGTTGGAGTCAA-TGTTCA 774587 Query 53441 AA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGT 53499 | || | || || ||||| | ||| || || || || || || ||||| | || Sbjct 774588 CTGCATCAGAGCCAAGGGCACGCGAATAGCTGGCACCAATGGGGTGTCCAATGGACTTGT 774647 Query 53500 GCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG 53559 ||| |||| || || | ||| || || || || ||||| | ||||| ||| || || Sbjct 774648 GCCCCTGCTTCGTGTTTACAATAATACAGCGCGTTACGTTGATCAGGGGGGTAACAAACG 774707 Query 53560 CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGA 53619 | ||| | || ||| |||| ||||||||||||||||| || || | || ||||| || Sbjct 774708 CCCTGGGGCATTTGCCGTCTATCTCGAGCCGTGGCACGCTGATATCTTCGATTTTCTGGA 774767 Query 53620 GCT 53622 || Sbjct 774768 TCT 774770 Score = 111 bits (122), Expect = 2e-19 Identities = 208/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 53321 CAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAG 53380 |||||||||||||| || ||| || | ||| || ||| ||||| ||||||||||| Sbjct 231276 CAGATGTCGAGCTGTTTTCTGCTGACACTGACTGAGGACAGTATCGAGGGCATCTACGAC 231335 Query 53381 ACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG 53440 || |||||| |||||| | || ||| | | ||||| || || | | || || Sbjct 231336 ACCCTCAAGAGGTGTGCACTGATAAGCAAATCAGCTGGTGGCATTGGAGTTAA-TGTTCA 231394 Query 53441 AA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGT 53499 | || | || || || |||| ||| || || || ||| | || |||| | || Sbjct 231395 CTGCATCAGAGCCAAGGGTACACGAATAGCTGGCACCAATGGCATATCCAATGGGCTTGT 231454 Query 53500 GCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG 53559 ||| ||||| || || | ||| ||||| || || || || | ||||||||| || || Sbjct 231455 GCCCATGCTTCGTGTTTACAATAACACAGCACGTTATGTTGATCAGGGTGGTAACAAACG 231514 Query 53560 CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGA 53619 ||| | || ||||||||||| ||||| |||||||| ||||| | || |||| || Sbjct 231515 TCCTGGGGCATTTGCCATCTACCTGGAGCCCTGGCACGCTGACATCTTCGATGTTCTAGA 231574 Query 53620 GCT 53622 || Sbjct 231575 TCT 231577 Score = 102 bits (112), Expect = 9e-17 Identities = 307/455 (67%), Gaps = 33/455 (7%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| ||||| |||| ||||||||||| || || || || |||||| |||| |||||| Sbjct 232515 AACTCTCTGCTACTGGCACCAATGCCAACAGCATCAACAGCCCAGATCCTGGGTAACAAC 232574 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 ||||| ||||||| ||||| | |||||||||| | || || | ||||| || Sbjct 232575 GAGGCCATCGAGCCCTACACCAGCAACATCTACTCCAGGCGCGTGCTGTCTGGTGAATTC 232634 Query 55607 GTCATGATCAACAAGCACCTCGTCAAGGACCT-GCAGAA---GATCAACAAGTGGAACCC 55662 | |||| || ||| | |||||||| | ||| |||| ||| || Sbjct 232635 CAGGTCGTCAATCCCCATCTCCTGAAGGACCTCACTGAACGCGATC----TCTGGGACGA 232690 Query 55663 GCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTC 55718 | || |||| | |||| | || |||| ||||| |||||| ||| || | | Sbjct 232691 CGACATGAAGAATCTGATAAT-AGC-GAACAATGGGTCGATCCAGAGTATCGAGAAAATA 232748 Query 55719 CTCTGC-GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 | | || | | |||||| | ||| | || || ||||||||||| |||| || |||| Sbjct 232749 C-CAGCAGACATCAAGGCACTGTACAGAACAGTCTGGGAGATTCCCCAGAGGA---TGAT 232804 Query 55777 --TG-ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC-ATCT 55832 || | ||| ||||||||| || || | ||||| ||||||||||| || | || | Sbjct 232805 CCTGAAAATGGCTGCTGATCGAGGGGCTTTTATCGATCAGTCCCAGTC---GACCAATGT 232861 Query 55833 T--CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 | ||||| | ||| | | | ||| | | || ||||| || | ||| ||| ||| Sbjct 232862 TCACATGGCCAGTCCAACCCCTGAGAAGCTCACGTCCATGCATTTCTTCGGTTGG--GAA 232919 Query 55891 G--GGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | ||| | ||||| || ||||||||||| |||| Sbjct 232920 GCTGGATTGAAGACTGGGATGTACTATCTCAGGAC 232954 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| ||||| |||| ||||||||||| || || || || |||||| |||| |||||| Sbjct 776068 AACTCTCTGCTACTGGCACCAATGCCAACAGCATCAACAGCCCAGATCCTGGGTAACAAC 776127 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 ||||| ||||||| ||||| | |||||||||| Sbjct 776128 GAGGCCATCGAGCCCTACACCAGCAACATCTAC 776160 >seq320 Length=265502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || |||||||| ||||||||||| |||||||| ||||||||| ||| |||| |||| Sbjct 15438 AGACCAGGCATGAGTCCACGCTTTTTCAACCAGAAGATGGCAGCGAAACTACCAGAGAAG 15379 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA 74915 || || || |||||| || ||||||| || | || ||||||| |||| Sbjct 15378 AAAATTCCCTCGACAGCGGCGAAGGCGATTAGTCTTTCGGCGAACGTTGCA 15328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547188858086400