Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10 158 1e-33 seq14 114 1e-20 seq676 107 2e-18 seq9 82.4 7e-11 >seq10 Length=2352850 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| ||||| | || || || ||||| ||| | || Sbjct 819891 ATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATCT 819950 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 819951 GACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGATCAA 820010 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || ||||||||||| ||| | || |||| || |||||| Sbjct 820011 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTACAAC 820070 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| ||| | ||| | ||| | ||| | || || || || Sbjct 820071 ATTCAAAAAGAGTCCACCCTCCATCTCGTTCTTCGTCTTCGAGGAGGAAT 820120 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || ||| |||| || ||||||||||| | || Sbjct 820119 ATGCAGATTTTCGTGAAAACTTTGACTGGTAAGACTATCACACTTGAAGTGGAGGCATCT 820178 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 820179 GACACGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 820238 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || |||||| ||||||| | || | || || |||||| Sbjct 820239 CAGCGTTTGATCTTCGCTGGTAAACAACTGGAAGATGGCAGAACTCTGTCAGACTACAAC 820298 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || ||||| ||||| || | || || || Sbjct 820299 ATCCAGAAAGAATCAACACTCCACTTGGTCCTGCGTCTGAGAGGAGGAAT 820348 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || || ||||| || | || Sbjct 820575 ATGCAGATTTTTGTCAAGACTCTGACTGGCAAGACCATCACACTCGAAGTAGAGGCCTCT 820634 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || || ||||| || || || || || ||| Sbjct 820635 GACACAATTGAAAACGTCAAGGCGAAGATCCAGGATAAAGAGGGAATTCCTCCAGACCAA 820694 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||||||||||| | ||| | || || |||||| Sbjct 820695 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTCTCAGACTACAAC 820754 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | || ||||| | ||| | || |||||||| Sbjct 820755 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTACGTCTTCGAGGTGGCAT 820804 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || |||||| | || || || ||||| || | || Sbjct 821031 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAGACCATCACACTCGAAGTAGAGGCCTCT 821090 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||| || ||||| || ||||| || || |||||| Sbjct 821091 GACACAATTGAAAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCAGATCAA 821150 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || |||||| ||||||| || || | ||||| |||||| Sbjct 821151 CAGCGTTTGATCTTTGCTGGTAAACAACTGGAAGATGGTAGAACTTTGTCCGACTACAAC 821210 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || || || || | || |||||| | ||| | | |||||| Sbjct 821211 ATCCAGAAAGAATCTACACTCCACTTGGTTCTTCGTCTCAGAGGTGGC 821258 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || |||| || ||| | || || || ||||| || | || Sbjct 820802 CATGCAGATCTTTGTAAAGACATTGACTGGGAAGACCATCACACTGGAAGTAGAGGCCTC 820861 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| || || || |||||||| || || || || || || Sbjct 820862 TGACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCA 820921 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| || ||||||||||| || | || | || |||||||| Sbjct 820922 GCAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGGAGAACACTCTCTGATTACAA 820981 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| | ||| | ||| | || || || || Sbjct 820982 TATCCAGAAAGAGTCCACTCTCCATCTTGTTCTTCGTCTTCGAGGAGGAAT 821032 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || ||| | || || || || || || | || Sbjct 819662 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTC 819721 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| || || || |||||||| || || || || || || Sbjct 819722 TGACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 819781 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||| || || || |||||||| | ||| | || || ||||| Sbjct 819782 GCAACGTCTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCAGACTACAA 819841 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | || ||||| | ||| | || ||||| || Sbjct 819842 CATTCAAAAGGAATCCACTCTGCACTTGGTCCTACGTCTTCGTGGTGGAAT 819892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || || || ||| | || || || ||||| ||| | || Sbjct 820347 ATGCAGATATTCGTGAAGACCCTCACGGGAAAGACGATCACCCTAGAAGTCGAAGCCTCT 820406 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || || || || ||||| || || || || Sbjct 820407 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAG 820466 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || ||||| ||||| || | || | || |||||||| Sbjct 820467 CAGCGTTTGATCTTCGCTGGTAAACAGTTGGAGGATGGGAGAACACTCTCTGATTACAAT 820526 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| | ||| | ||| | || || || || Sbjct 820527 ATCCAGAAAGAGTCCACTCTCCATCTTGTTCTTCGTCTTCGAGGAGGAAT 820576 >seq14 Length=2234412 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || |||||||| || || || ||| | || || || || ||||| | || Sbjct 1933397 CATGCAGATCTTCGTAAAAACCCTAACTGGGAAGACCATCACCCTCGAGGTGGAGGCTTC 1933456 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| |||||| |||||||| ||||| || ||||| || || || || Sbjct 1933457 TGACACAATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCAGACCA 1933516 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || ||||| | || || | ||| | || |||||||| Sbjct 1933517 GCAGAGGCTGATTTTCGCTGGTAAACAGCTCGAGGATGGACGCACCCTGTCTGATTACAA 1933576 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| ||||| | || ||||| | | || || ||||| Sbjct 1933577 CATTCAGAAGGAATCGACACTTCACTTGGTACTCAGATTACGTGGTGG 1933624 >seq676 Length=265522 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || ||||| ||||| |||||| | || || || || || || | || Sbjct 178554 ATGCAGATATTCGTGAAAACGCTGACGGGCAAGACCATCACCCTCGAGGTCGAGGCCTCT 178495 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||| || || || || || || || || || || || Sbjct 178494 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 178435 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || ||||||||||||||| || || |||| ||||||||| Sbjct 178434 CAGAGACTGATCTTCGCTGGAAAACAATTGGAAGACGGTCGCACTCTTTCTGATTACAAC 178375 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || ||||| || || | || ||||| Sbjct 178374 ATCCAGAAGGAATCTACTCTTCACTTGGT 178346 >seq9 Length=4000459 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 49819 TACGCACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCC 49878 |||| ||||| ||| | || ||||| || | || || |||||||||| | | || || Sbjct 868319 TACGAGCCCGGAAAACGCCACTGGTTAAAGGTAAAGAAGGACTACTTGTTCAACGGAGCA 868378 Query 49879 ATGGCCGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGT 49938 ||||||||||||| ||| | || || | || || |||||||| | || || || ||| Sbjct 868379 ATGGCCGATAGCGCAGATCTCGTCGTGCTTGGCGCTTGGTACGGCACCGGCAACAAAGGT 868438 Query 49939 GGCTTCTTGTCTACATTTTTGATGGGATGTCTCGACACAAACCGAAACGTTTGGACGACA 49998 || | |||| | || | ||||| || | ||||| || ||| | ||| ||| Sbjct 868439 GGAATGATGTCGATTTTCCTCATGGGTTGCCACGACAAAACCCGGGATAAATGGGTCACA 868498 Query 49999 GTAACAAAGGTGCAC 50013 || || ||||| ||| Sbjct 868499 GTGACCAAGGTCCAC 868513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434896828047360