Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq3098 235 2e-57 seq3413 214 7e-51 seq2972 172 2e-38 seq3282 152 2e-32 seq2452 123 1e-23 >seq3098 Length=1355 Score = 235 bits (260), Expect = 2e-57 Identities = 524/783 (67%), Gaps = 20/783 (3%) Strand=Plus/Plus Query 24054 CCATCCGGCACCAACTGGTCGCAGTACTGGGAAATCCGGTACATCTCCCAG--------C 24105 ||||| || || ||||||||||| ||||| | ||| |||||| | ||| | Sbjct 174 CCATCAGGTACTAACTGGTCGCAATACTGCGCGATCTGGTACAGCGTCCACTTCGAAACC 233 Query 24106 GATCGACCATCCAAGCCTTGATGCGTTTACCCACACCGAAGCGATCGTTGGTCACGATGT 24165 || || || |||||||||||| || || | ||| ||||||||| || || ||||| Sbjct 234 GAGAGATTTTC--AGCCTTGATGCGGTTGCCAAGACCAAAGCGATCGCTGATCTGGATGT 291 Query 24166 CGTAGGTGTGCCAGACCGGGTTGTCGGTCCAGGCCTGTTTCATCGTGCCGTCCCAGATGC 24225 ||||| |||| ||||||||| || | ||| ||| | ||||||||||| | Sbjct 292 CGTAGTAAATCCAGGCCGGGTTGTTGGAGAACGCCCATTTAAAGGTGCCGTCCCATGCCC 351 Query 24226 CGAGGTAGGCCCGGGTCTCCGGATCGTAATTGCTCGGCACTTGGACCTTCCGCCCG--CG 24283 || ||||| |||| ||||||| ||||| || || ||| | ||||| || Sbjct 352 CGCCGTAGGTACGGGCTACCGGATCATAATTTGAGGGAACGCGGATAATGCGCCCATCCG 411 Query 24284 GCAGTCGACTGTGACAGCCGGAATGTTGCTGAACTGCTCTGCGCTGAACTCGACGTACAG 24343 || || | | | |||| || || |||||||| || |||| ||| |||| Sbjct 412 GC--TCACAGGAAATAACCGGGATATTCTGGAACTGCTTCGCATCAAACTGGACAAACAG 469 Query 24344 CAGGGCCGTGTTCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTGTAGCCGGCGATCAG 24403 |||||| || | |||||| |||| ||||| || || | || ||| | | | || | Sbjct 470 CAGGGCGGTTTCCGGGTAACGCAATTTCGCATCAATGATTTCCGTGATGGCATCAATAAC 529 Query 24404 CATGGTGTCGGCGATGCGGTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCTG 24463 ||| | ||||| ||||||||| | | |||||||| | || || ||||| | || Sbjct 530 CATTTTATCGGCAATGCGGTTGCTCGTTGAATTCGGCGTAATACGACGCACGCGGATTTG 589 Query 24464 CCAGCCATTGGTGGCCGCCGGCAGGTCGATCCGGCGGGAACGCTCGTAGCGGGTGGTGGT 24523 |||||| | || || || | ||| || || | ||||| || || || || Sbjct 590 CCAGCCGGTTGTTGCATTGGGTAAGTCAATGCGATGACTGCGCTCATATTTCGTCGTAGT 649 Query 24524 CTTGCCATCGACGGCCTCGCGCAGCACCTCCTGATAGGCGCCGCCGTCGGTGGCCAGATC 24583 |||||| ||||| || ||||| ||||||||| ||| ||||| | ||||| ||| Sbjct 650 CTTGCCGTCGACCGCTGTTTTCAGCAGTTCCTGATAGCTGCCACCGTCCGGGGCCACATC 709 Query 24584 TACGGCATATTCGATCCGGTACCCGCCGATGTTGCCGTTGGTGTCC---TGCTGCTGGAG 24640 | |||||| || || || || || | | | ||||| ||| || |||||||| Sbjct 710 AATGGCATACTCAATGCGATAACCCACTACATCACCGTTA---TCCAGTTGTTGCTGGAG 766 Query 24641 CGCTGGCCAGGCGAAGCGCAGGCGCACTGCGGAAAGCTGGGTATTGCTCAGCGAGCGCAC 24700 ||| | ||| | |||||||| ||||| ||||| || |||||||| ||| ||||||| Sbjct 767 CGCAGACCATGAAAAGCGCAGACGCACAGCGGATAGTTGGGTATTCGGCAGGTAGCGCAC 826 Query 24701 CCAGGGCGTATCGCTGCGCAACTCGACGTTGACGCTGGTTTCGTTCTCAACGGCAGGGAT 24760 ||| | || | |||| ||||| | |||| | |||| ||||||||| | |||| Sbjct 827 CCACGCTGTCTGGCTGGTTAACTCTGTGCTGACAGTAATTTCATTCTCAACGCCGGGGAA 886 Query 24761 GCCCGGGATGTAGTCCTGGTCCACCGCCCCCGCGCGCCACTCCCACTTAACGTTTGGGAA 24820 || ||||||||| || || || || | ||| |||||||| | ||| || || Sbjct 887 ACCGGGGATGTAGGATTGATCGGGCGTGCCGGAGCGAAACTCCCACGTCACGCCTGAAAA 946 Query 24821 GTT 24823 ||| Sbjct 947 GTT 949 >seq3413 Length=1126 Score = 214 bits (236), Expect = 7e-51 Identities = 277/382 (73%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 6051 CGCCCTGCTGATCGTGGCAGACCAGTACAAACTGAACCCCTTCACCAAGGAGTTGTACGC 6110 |||||| || ||||| || |||||||| ||| ||||| | || || || | ||||| Sbjct 1005 CGCCCTACTTATCGTTGCCAACCAGTACGGACTCAACCCGTGGACAAAAGAAATTTACGC 946 Query 6111 ATTCCCCGACAAGAACAACGGCATCGTGCCGGTTGTTGGTGTGGATGGCTGGGCTCGGAT 6170 || || |||||| | || || || |||||||| ||||| ||||| ||||| ||||| Sbjct 945 CTTTCCTGACAAGGGC---GGGATTGTTCCGGTTGTCGGTGTCGATGGATGGGCGCGGAT 889 Query 6171 CATCAACGAGAACCCACAGTTCGATGGCATGGAATTCTCAATGGACCAGCAGGGAACCGA 6230 ||| ||||| | || || |||||||||||||||||| || || | | || Sbjct 888 CATTAACGAACATCCGCAATTCGATGGCATGGAATTCAGCTACGATAAGGACGAGGGCGC 829 Query 6231 ATGCACCTGCAAGATCTATCGGAAGGACCGCAGCCATGCCATCAGCGCGACTGAGTACAT 6290 || || |||| ||| || || || || |||| || ||| | || || ||||| Sbjct 828 ATCGACTTGCAGGATTTACCGTAAAGATCGCAAACACCCCACTGTAGTCACCGAATACAT 769 Query 6291 GGCCGAGTGCAAGCGGAACACCCAGCCTTGGCAGTCCCATCCGCGCCGGATGCTTCGCCA 6350 || |||||| |||| || |||||||| ||||| || || || ||| ||||| ||||| Sbjct 768 GGGCGAGTGTGAGCGCAATACCCAGCCGTGGCAATCACACCCCACCCGTATGCTGCGCCA 709 Query 6351 CAAGGCAATGATTCAGTGCGCACGCCTCGCGTTCGGGTTCGCCGGCATATACGACCAGGA 6410 |||| || |||||||||| |||||| | || || ||||| || ||||| |||||| || Sbjct 708 CAAGTCACTGATTCAGTGTGCACGCATGGCATTTGGGTTTGCTGGCATTTACGACAGCGA 649 Query 6411 CGAGGCCGAGCGGATCGTTGAA 6432 ||| || ||||||||| | ||| Sbjct 648 CGAAGCAGAGCGGATCATCGAA 627 >seq2972 Length=2207 Score = 172 bits (190), Expect = 2e-38 Identities = 486/734 (66%), Gaps = 22/734 (3%) Strand=Plus/Minus Query 24054 CCATCCGGCACCAACTGGTCGCAGTACTGGGAAATCCGGTACATCTCCCAG--CGAT-CG 24110 ||||| || |||||||||||||| ||||| | ||| |||||| | ||| ||| || Sbjct 2034 CCATCAGGAACCAACTGGTCGCAATACTGCGCGATCTGGTACAGCGTCCACTTCGAGACG 1975 Query 24111 ACCA---TCCAAGCCTTGATGCGTTTACCCACACCGAAGCGATCGTTGGTCACGATGTCG 24167 | | ||| |||||||| || || | || ||||||||| || || ||||||| Sbjct 1974 GAAAGGTTTTCAGCTTTGATGCGGTTGCCAAGGCCAAAGCGATCGCTGATCTGGATGTCG 1915 Query 24168 TAGGTGTGCCAGACCGGGTTGTCGGTCCAGGCCTGTTTCATCGTGCCGTCCCAGATGCCG 24227 || |||| |||| || | ||| | ||| ||| | ||||||| ||| ||| Sbjct 1914 TAATACACCCAGGCCGGATTATTGGTGAATGCCCATTTAAAGGTGCCGTTCCATGCCCCG 1855 Query 24228 AGGTAGGCCCGGGTCTCCGGATCGTAATTGCTCGGCACTTGGACCTTCCGCCCGC--GGC 24285 ||| | |||| ||||||| ||||| || || ||| | |||||| ||| Sbjct 1854 CTGTAAGTACGGGCTACCGGATCATAATTTGAGGGAACACGGATAATGCGCCCGTCTGGC 1795 Query 24286 AGTCGACTGTGA--CAGCCGGAATGTTGCTGAA-CTGCTCTGCGCTGAACTCGACGTACA 24342 || || | | || |||| || || ||||| ||||| || |||| || ||| Sbjct 1794 --TC-ACAGGAAATCA-CCGGGATATT-CTGAAACTGCTTCGCATCAAACTGAACAAACA 1740 Query 24343 GCAGGGCCGTGTTCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTGTAGCCGGCGATCA 24402 || || || | ||| || || | ||||| || || | || || | | | || | Sbjct 1739 ACAATGCGGTTTCCGGATAACGTAATTTCGCATCAATGATTTCCGTTATGGCATCAATAA 1680 Query 24403 GCATGGTGTCGGCGATGCGGTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCT 24462 ||| | ||||| ||||||||| | | |||||||| | || || ||||| | | Sbjct 1679 CCATTTTATCGGCAATGCGGTTGCTCGTTGAATTCGGCGTAATACGACGCACGCGGATTT 1620 Query 24463 GCCAGCCATTGGTGGCCGCCGGCAGGTCGATCCGGCGGGAACGCTCGTAGCGGGTGGTGG 24522 ||||||| | || || || | ||| || || | ||||| || || || | Sbjct 1619 GCCAGCCGGTTGTTGCATTGGGTAAGTCAATGCGATGACTGCGCTCATATTTCGTCGTAG 1560 Query 24523 TCTTGCCATCGACGGCCTCGCGCAGCACCTCCTGATAGGCGCCGCCGTCGGTGGCCAGAT 24582 ||||||| ||||| || ||||| ||||||||| ||| ||||| | ||||| || Sbjct 1559 TCTTGCCGTCGACCGCTGTTTTCAGCAGTTCCTGATAGCTGCCACCGTCCGGGGCCACAT 1500 Query 24583 CTACGGCATATTCGATCCGGTACCCGCCGATGTTGCCGTTGGTGTCC---TGCTGCTGGA 24639 | | || ||| || || || || || | | | |||||| ||| || ||||||| Sbjct 1499 CAATGGTATACTCAATGCGATAACCCACTACATCGCCGTTA---TCCAGTTGTTGCTGGA 1443 Query 24640 GCGCTGGCCAGGCGAAGCGCAGGCGCACTGCGGAAAGCTGGGTATTGCTCAGCGAGCGCA 24699 |||| | ||| | |||||||| ||||| || || || |||||||| ||| ||||| | Sbjct 1442 GCGCAGACCACGAAAAGCGCAGACGCACAGCTGATAGTTGGGTATTCGGCAGGGAGCGTA 1383 Query 24700 CCCAGGGCGTATCGCTGCGCAACTCGACGTTGACGCTGGTTTCGTTCTCAACGGCAGGGA 24759 |||| | || | |||| || || | ||||| | |||| ||||||||| |||||| Sbjct 1382 CCCACGCTGTCTGGCTGGTTAATTCTGTGCTGACGGCGATTTCATTCTCAACGCCAGGGA 1323 Query 24760 TGCCCGGGATGTAG 24773 ||| ||||| ||| Sbjct 1322 AGCCGGGGATATAG 1309 >seq3282 Length=7904 Score = 152 bits (168), Expect = 2e-32 Identities = 234/334 (70%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 ||||| ||||| ||||| ||||| || || || | || ||||||||| ||| || Sbjct 7264 AGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGGCAAGACCCGGAAGTCCGTTAT 7323 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 |||| ||||| ||| || | ||| | || || ||||| || | |||| ||| Sbjct 7324 CTGCCGAACGGTGGTGCCGTTGCTAACCTGACTCTGGCCACGTCAGATACCTGGCGCGAC 7383 Query 7396 AAGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGC 7455 ||||||||||| |||| | || ||| | || | |||||||| | | | ||| Sbjct 7384 AAGCAGACCGGTGAGCAGAAAGAGCGCACAGAATGGCACCGCGTCACGCTGTACGGAAAG 7443 Query 7456 CTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGC 7515 ||||| || | || || || ||||||||||| || || ||||| || || ||||| Sbjct 7444 CTGGCTGAAGTGGCTGGAGAATACCTGCGCAAAGGCTCACAGGTGTATGTTGAAGGTCAA 7503 Query 7516 CTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATC 7575 |||||||| || || ||||||| |||| ||| ||||| || || ||||| || ||| | Sbjct 7504 CTGCGCACGCGTAAATGGCAGGATCAGAGCGGGCAGGATCGTTATACCACGGAAGTAGTG 7563 Query 7576 GTCGACATGCACGGACAGATGCAGATGCTTGGCG 7609 || ||||| ||| ||||||||||| |||| Sbjct 7564 GTAGACATTTCCGGCTCCATGCAGATGCTGGGCG 7597 >seq2452 Length=2364 Score = 123 bits (136), Expect = 1e-23 Identities = 232/341 (68%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 7275 GAGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTA 7334 |||||| || |||||||| ||||| || || || |||| ||||| || ||||| Sbjct 1865 GAGAGGCGTAAACAAAGTGATTCTCGTGGGACACCTCGGGCAAGACCCCAAAGTGCGCTA 1924 Query 7335 CATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGA 7394 || || | ||| || ||| | ||| | || | ||||| || |||| || Sbjct 1925 CACACCGAGCGGATGGGCAGTGGCAAACCTGACTGTAGCCACTTCTGATTCATGGAGAGA 1984 Query 7395 CAAGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCG 7454 ||||||||| || |||| |||| ||| | || | || ||||| | | | ||| Sbjct 1985 CAAGCAGACTGGAGAGCAGAAGGAGCGCACGGAATGGCATCGCGTCACGCTGTACGGAAA 2044 Query 7455 CCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAG 7514 |||| ||| | || || || || || ||||||||||| ||||| || |||| ||| Sbjct 2045 GTTGGCAGAGGTGGCTGGTGAATATCTACGCAAGGGTTCGCAGGTATATATCGAGGGCCA 2104 Query 7515 CCTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAAT 7574 ||||||| | |||||||| | ||| || || ||| ||||||| || || ||| | Sbjct 2105 ATTGCGCACAAGGAAGTGGCAAGACCAGTCAGGGCAAGACAGATACACAACGGAAGTAGT 2164 Query 7575 CGTCGACATGCACGGACAGATGCAGATGCTTGGCGCCAAGC 7615 ||||| || |||| |||||||||||||||| |||| Sbjct 2165 TGTCGATATTGGCGGATCAATGCAGATGCTTGGCGGTAAGC 2205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194810020119296