Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq3855 527 2e-145 seq3640 114 3e-21 seq3079 100 7e-17 seq1892 91.5 4e-14 seq3688 86.0 2e-12 >seq3855 Length=27953 Score = 527 bits (584), Expect = 2e-145 Identities = 910/1327 (69%), Gaps = 18/1327 (1%) Strand=Plus/Minus Query 16060 TACCAGCAGCGCTGGTTCGAGGACGAGAGTCCGATCATGATCGCGGAGAAGTCTCGCCGC 16119 || || || ||||||||| ||||| || ||| | || || || || || ||||| Sbjct 18495 TATCAACAACGCTGGTTCCTCGACGACAGCCCGGTGTGCATTGCCGAAAAATCCCGCCGT 18436 Query 16120 ACCGGTCTGACCTGGGCCGAAGCCGGGCGCAACGTGATCAATGCCGCCAAGCCGCGGCGC 16179 ||||| |||||||||||||| ||||| |||||||| |||| ||| |||| |||||||| Sbjct 18435 ACCGGCCTGACCTGGGCCGAGGCCGGTCGCAACGTCATCACCGCCAGCAAGTCGCGGCGC 18376 Query 16180 CGAGGTGGCTGCAACACCTTCTACGTCGGCAGCAAGCAGGAGATGGCGCTGGAGTACATC 16239 || || |||| || ||||||||||||||| |||||||||||||||| || || Sbjct 18375 GATGGCGGACGCAATGTGTTTTACGTCGGCAGCAAGAAGGAGATGGCGCTGGAATATATT 18316 Query 16240 GCCGCCTGCGCGTTGTTCGCCCGCGCCTTCAACGAGCTGGCCGAGGCTGACGTCTACGAG 16299 |||||||||||| |||| ||||||||||| ||| |||||||| |||| || || |||||| Sbjct 18315 GCCGCCTGCGCGCTGTTTGCCCGCGCCTTTAACCAGCTGGCCCAGGCCGATGTTTACGAG 18256 Query 16300 CAGACCTTCTGGGACGAAGGGAAGAAGGAAGAGATCCTGACCTACATGATCCGCTTCCCG 16359 |||||||||||| | |||| | || || || || |||||||||||||| ||| Sbjct 18255 TCCACCTTCTGGGACAGCGAGAAGCATGAGGAAATTCTCCAGTACATGATCCGCTTTCCG 18196 Query 16360 AAGTCGGGGCGGAAGATCCAGGCCCTGAGCAGCCGGCCGAGCAACCTGCGCGGCCTGCAG 16419 | || || || ||||| | ||| || ||| |||||| || ||| ||||| Sbjct 18195 CACAGCGGCTTTAAAATTCAGGCGTTAAGCTCTCGCCCGTCCAACCTCCGTGGCTTGCAG 18136 Query 16420 GGCGACGTGGTGATCGACGAGGCGGCGTTCCACGAGTCCCTGGAGGAACTGCTGAAGGCC 16479 |||||||||||||| ||||||||||||||||| || ||||| || |||||||| ||||| Sbjct 18135 GGCGACGTGGTGATTGACGAGGCGGCGTTCCATGAATCCCTTGAAGAACTGCTCAAGGCG 18076 Query 16480 GCCCTGGCGCTGACGATGTGGGGTAACAAGGTCCGCCTGATCAGCACCCACAACGGCGTC 16539 || |||||||| | |||||||| ||| || |||| |||||| ||||| ||| Sbjct 18075 GCGCTGGCGCTCAACATGTGGGGCGCGCGGGTGCGGTTGATTTCCACCCATAACGGGGTC 18016 Query 16540 GACAACCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACAGCGTT 16599 || |||||||| |||||||| | Sbjct 18015 GATAACCCGTTTAATGCCTACATTCAGGACGCCCGCGAAGGGCGCAAGGATTACAGCCTG 17956 Query 16600 CACCGCATCACCCTGGATGATGCGATCGCCGAAGGGCTGTACAAGCGAATCTGCTTCGTC 16659 ||||||||||| || ||||| ||||| | |||||| ||||| || |||||| ||| Sbjct 17955 CACCGCATCACGCTCGATGAGGCGATTGGCGAAGGACTGTATCGCCGTATCTGCACGGTC 17896 Query 16660 ACCGGCCAGGAGTGGTCGCCCGAGGCCGAGAAGGCGTGGCGCGATGGGCTGTACAGGAAC 16719 ||||| |||| ||||||||| || ||||| || |||||||||||| ||||| | || Sbjct 17895 ACCGGGCAGGTGTGGTCGCCGGATGCCGAAAAAGCGTGGCGCGATAACCTGTATAAAAAT 17836 Query 16720 GCCCCCAATACCGAGTCCGCCGACGAGGAATACGGCTGCATCCCGAAGAAGTCCGGCGGC 16779 |||||||||| ||| | ||||| ||||||||||||||| | ||| ||||| ||||| Sbjct 17835 GCCCCCAATAGCGAATGTGCCGAGGAGGAATACGGCTGCGTGCCGCGCAAGTCGGGCGGT 17776 Query 16780 GCCTACCTCTCTCGCGTGCTCATCGAGCAGGCGATGGTCCAGGACCATTCG-ATCCGTAT 16838 ||||| || | ||| ||| || ||| |||||||| || || | || ||| | Sbjct 17775 GCCTATCTTGCCCGCCCGCTGATTGAGGCGGCGATGGCCCCGG-CAGGCCGTGTCCCCCT 17717 Query 16839 CTACCGGTACGAGGCGCCGGAAGGTTTCGAAGGCTGGA-CGCCACAGATGCGCGAAGACG 16897 || | || || |||| | || ||| |||| |||| | | |||||||| | Sbjct 17716 GCTGCGCTTTGAAGCCCCGGCGGTATTTGAACTGTGGAGCGCCGC-GCAGCGCGAAGCTG 17658 Query 16898 AGATCCGCACCTGGTGCGAAGAAAACCTTCTGCCAGAGCTGGCCAGGCTGGACCCGGAGA 16957 | | ||||||| | | | || | | | |||| | | || | ||||| Sbjct 17657 AAGTGGAGGCCTGGTGTCAGGCGCATCTCGAGGCGGTGCTGACGACCCTTGCGCCGGACT 17598 Query 16958 ACACCCACAGCTTCGGCGAAGACTTCGCGCGCCGCGGCGACCTGACCGTGTTCACCCCGC 17017 || | |||||||| ||||| || ||| ||||| ||| | ||||| | Sbjct 17597 GTCGTTACTGTTTCGGCGAGGACTTTGCCCGCAAGGGCGATCTGTCGGTGTTTGTGGTAC 17538 Query 17018 TGCAGATCTCGCCGACCCTACGCAAGCGGGAGGCGTTCCGGGTCGAGCTGCGCAACCTGA 17077 || ||| | |||| || ||||||| |||||| | || ||||||||||||||| | | Sbjct 17537 TGGCCATCGCCCCGAATTTAAGCAAGCGCGAGGCGCTGCGCGTCGAGCTGCGCAACGTCA 17478 Query 17078 CCTACGAAGCGCAGCGCGACATCATGTTCTTCATCTGCGATCGCCTGCCGCGTGTCGTGG 17137 |||| || ||| | || ||| || ||| || ||||||||| | |||| Sbjct 17477 CCTATGACCAGCAAAAGCAGATAATGCTCACTATCCTGACCCGGCTGCCGCGTCTGGTGG 17418 Query 17138 GCATGGCCTTCGATGCCACCGGCAACGGCGGATACCTCGCGGAACAGGCGGC---GCTGC 17194 | ||||| || ||||||||||||||||| || || || | |||| || ||||| Sbjct 17417 GGGCCGCCTTTGACGCCACCGGCAACGGCGGCTATCTGGCCG---AGGCCGCCCGGCTGC 17361 Query 17195 GGTATGGCCCAGCGGTGGTCGAGCAGGTCAGCCTCAACCTTGCC----TGGTACGCCGAG 17250 | ||||| | ||||||| |||| || || | | ||||| ||||| Sbjct 17360 ATTTCGGCCCGGACATGGTCGATTGCGTCA----CACTCTCGGCAAAATGGTATGCCGAA 17305 Query 17251 TGGATGCCCAAGCTCAAAGGGGAGTTCGAGGCCTTCAACATCGAGCTGTCCAGGCACCAA 17310 ||||||||||| || ||||| ||| | || || ||| | ||| || | || || Sbjct 17304 TGGATGCCCAAACTGAAAGGTGAGCTGGAAGCGCAAAACCTGACCCTGGCCCGCCATCAG 17245 Query 17311 AGCACGCTGGACGATCTTCTCTCGATCAAGGTCGAGAACGGCATTCCAGTGATCGATAAA 17370 ||||||||| ||| | || |||||||| | |||||| || || || || || Sbjct 17244 TCCACGCTGGATGATTTGCTGCATATCAAGGTAGTGAACGGGATACCGCAAATTGACAAG 17185 Query 17371 GGCCGCA 17377 ||||||| Sbjct 17184 GGCCGCA 17178 >seq3640 Length=1178 Score = 114 bits (126), Expect = 3e-21 Identities = 295/443 (67%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 4770 CAGTTCGGGCTGACCGATCAGGATGATGCTGAGCAGCTTGTCAAATCCGTCCTCGAACTG 4829 ||||||||| || || | ||||| |||| ||||| || | ||| ||||| || | || Sbjct 709 CAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTTTTTTAAAGCCGTCTTCCAGCTC 768 Query 4830 ATCGCGCATGCGCTTGAGGTGGTTGAGGGTCTGGGTCGGGATCGAGTGCGCCTCTTCTAT 4889 | | | ||| |||||||| || | |||| || | || | || || || ||||| || Sbjct 769 AAAG---AAGCGTTTGAGGTGCTTTAAGGTCGGGATGGGCAGAGAATGGGCTTCTTCAAT 825 Query 4890 GATCACGACATGACGGTTGCCGGC--GGCGTATGAGTTCTTGAGGCAGGTGTGGACCTGG 4947 | || ||||| | || ||||| ||| || || | | ||||| | ||| Sbjct 826 CACCAGCACATGGCTGTACCCGGCACGGCTGCTGTCTTTTAATAGTCGGTGT--AACTGA 883 Query 4948 CGGAAGCGAGCTTCGGGGCTGGACTTAGGTGTTTCCAGCGGTGCCACGGCATACATGATG 5007 |||||||| || || || | ||| || ||||||| || |||| || || | || Sbjct 884 CGGAAGCGGGCCTCCGGCGAGCGTTTAAGTTTTTCCAGTGGGGCCAGGGTATGGACAATA 943 Query 5008 GCTTCTGCGATGTGAGTCGCTTTCAGGGTCTTGCCCTTGAT-GTCGTTGGCCTCCATGCC 5066 || || || | | |||||||||||||||||| |||| ||| ||| | ||||| | Sbjct 944 GCCTCGGCAAGACTGGCGGCTTTCAGGGTCTTGCCC-TGATGGTCATTGTCTTCCATCGC 1002 Query 5067 AACCACGAAGGGGTCGATGGTTATGACCGGCTCGTT---GCG---AAGACGGTGGGTCAG 5120 | |||| |||| || || | || || |||| || || || | ||||| Sbjct 1003 CAGCACGTAGGGTTCAATCACCACCACGGGGGCGTTTTCCCGATAAATGCGATCAGTCAG 1062 Query 5121 ATCGCGACGCAGAGTGCTCTTGCCGGCACCGGACTCGCCCACGATGGCGAGGAAGCCGTC 5180 || |||||||| ||||| || || | ||||| || || | | |||| || || | Sbjct 1063 GTCACGACGCAGGGTGCTTTTACCCGAGCCGGATTCACCGATAACCGCGATAAAACCACC 1122 Query 5181 ATGGCGTGCGGTTTGGTACATCG 5203 || ||||||||| ||||||| || Sbjct 1123 ATAGCGTGCGGTCTGGTACAACG 1145 >seq3079 Length=1278 Score = 100 bits (110), Expect = 7e-17 Identities = 293/443 (66%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 4770 CAGTTCGGGCTGACCGATCAGGATGATGCTGAGCAGCTTGTCAAATCCGTCCTCGAACTG 4829 ||||||||| || || | ||| | |||| ||||| || | ||| ||||| || | || Sbjct 451 CAGTTCGGGTTGTCCCAGCAGAACGATGGACAGCAGTTTTTTAAAGCCGTCTTCCAGCTC 510 Query 4830 ATCGCGCATGCGCTTGAGGTGGTTGAGGGTCTGGGTCGGGATCGAGTGCGCCTCTTCTAT 4889 | | | ||| |||||||| || | |||| | | || | || || || ||||| || Sbjct 511 AAAG---AAGCGTTTGAGGTGCTTTAAGGTCGGTATGGGCAGCGCATGGGCTTCTTCAAT 567 Query 4890 GATCACGACATGACGGTTGCCGGCGGCGTATGAGTTCTTG--AGGCAGGTGTGGACCTGG 4947 | || ||||| | || ||||| || || |||| | | | ||| | ||| Sbjct 568 CACCAGCACATGGCTGTACCCGGCACGGT-TGCTCTCTTTTAATACCCG-GTGTAGCTGA 625 Query 4948 CGGAAGCGAGCTTCGGGGCTGGACTTAGGTGTTTCCAGCGGTGCCACGGCATACATGATG 5007 || ||||| || || || | || || ||||||| || |||| || || | || Sbjct 626 CGAAAGCGGGCCTCCGGCGAGCGTTTGAGTTTTTCCAGTGGGGCCAGGGTATGGACAATA 685 Query 5008 GCTTCTGCGATGTGAGTCGCTTTCAGGGTCTTGCCCTTGAT-GTCGTTGGCCTCCATGCC 5066 || || || | | ||||||||||| |||||| |||| ||||||| | |||||| | Sbjct 686 GCCTCGGCAAGACTGGCGGCTTTCAGGGTTTTGCCC-TGATGGTCGTTGTCTTCCATGGC 744 Query 5067 AACCACGAAGGGGTCGATGGTTATGACCGGCTCGTT---GCG---AAGACGGTGGGTCAG 5120 | |||| |||| || || | || || |||| || || |||| ||||| Sbjct 745 CAGCACGTAGGGTTCAATCACCACCACGGGGGCGTTTTCCCGATAAATGCGGTCAGTCAG 804 Query 5121 ATCGCGACGCAGAGTGCTCTTGCCGGCACCGGACTCGCCCACGATGGCGAGGAAGCCGTC 5180 || |||||||| || || || || | ||||| || || | | ||||| |||||| | Sbjct 805 GTCACGACGCAGGGTACTTTTACCCGAGCCGGATTCACCGATAACGGCGATAAAGCCGCC 864 Query 5181 ATGGCGTGCGGTTTGGTACATCG 5203 || || ||||| ||||||| || Sbjct 865 ATAACGGGCGGTCTGGTACAACG 887 >seq1892 Length=4253 Score = 91.5 bits (100), Expect = 4e-14 Identities = 277/419 (66%), Gaps = 8/419 (2%) Strand=Plus/Minus Query 13362 TTTGCCGCACAGGTTCACCAGGAAAGCCGTTGGCGTGCTGATGCCCGCTCGCCTGTTGGT 13421 |||||||| ||| |||||||||| ||| | ||| || ||| ||| || || ||| Sbjct 1919 TTTGCCGCCCAGCTTCACCAGGAGAGCGGCTGGAACCCTCGCGCCGTCTCCCCGGTGGGT 1860 Query 13422 GCCCAGGGTCTGGCGCAGTTCATGCCCGGAACCGCTGAGTGGATCGCCGGCCTGTATCCG 13481 || ||||| ||||||||||| |||||| ||| ||||| ||| || | |||| || | Sbjct 1859 GCTCAGGGGCTGGCGCAGTTTATGCCCTCAACGGCTGACTGGTTCAGCCGCCT-CAT--G 1803 Query 13482 GCCGTCCTCGGCACCAATCAGCCGTTCAATCCAGGCTGGGCACTGCGCGCGCTGGTCAC- 13540 | | | | ||||||| || || || || | |||||| | || || || | | | Sbjct 1802 CCTGAATTATCCTCCAATCAACCCTTTAACCCTGCCTGGGCTATTCGAGC-CTTGACGCG 1744 Query 13541 CTACGACCGTTGGCTCTACGACCGAAACCAGGCCTCCAGCGAGTGTGATCGCTGGGCATT 13600 || ||||| ||||| | || ||| | || | ||||||||| ||| ||| | Sbjct 1743 TTATGACCGCTGGCTATGGGAGCGAGTCAGTGCACACGACGAGTGTGAGCGCATGGCGAT 1684 Query 13601 CGTACTGTCCGCTTACAACGGCGGCCAGGGGTGGGTAAATCGCGACCGTAGGCTGGCCTT 13660 | ||||| || ||||||||||| ||| ||| | | || || | | |||| | Sbjct 1683 GGCGCTGTCAGCCTACAACGGCGGGTTGGGCTGGATGCAGCGAGATCAAACACTGG-CGA 1625 Query 13661 GGCATC-CGGCGCCGACCAGCTGGCCTGGTTCGATTCCGTCGAGCGCTTCAACGCCGGGC 13719 ||| | || |||| | | |||||| | | || | | |||| ||||| | Sbjct 1624 CGCAGCGAGGGTTAGACCGTCAGCGCTGGTTTGGTCATGTTGCCACCGTCAATGCCGGAC 1565 Query 13720 GCTCGGCCGCCAACTTCCGCGAGAACCGCAACTACCCGCGCCTCATCCTGC-TGCGTTA 13777 | | || |||||| |||||||| ||| |||| |||| | ||| |||| || |||| Sbjct 1564 GTGCTGCGTCCAACTGGCGCGAGAATCGCCACTATCCGCAGCGCATTCTGCATGAGTTA 1506 >seq3688 Length=22785 Score = 86.0 bits (94), Expect = 2e-12 Identities = 247/373 (66%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 2621 CTCCGCGCGAGCGCCTTCTG--TCCATTCGTGGAGGCACTCGTCGATCAACGCCTTGGCC 2678 ||||| ||| ||| ||||| |||| || | ||| || || ||||| |||||||| Sbjct 864 CTCCGGGCG--CGCATTCTGCGTCCACTCCGTCATGCAATCATCAATCAATGCCTTGGCG 807 Query 2679 GCCTGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGA 2738 ||||| | ||||| || |||| ||| ||| |||||| || || ||||||||||| Sbjct 806 GCCTGGATACGCTCATCAAAGGTAATGCGGTCCTGCATGGCGCGCATAACCTTGTAGCGG 747 Query 2739 CCGTCGAAGCTGACCAGGGAGGCGTTGCCCTTCTTGCCACCTACCTTCGCCTGGTACTGC 2798 || || ||| ||| | | ||||| || |||| || || || ||||||| Sbjct 746 CCATCAAAGGAATACAGCGTCACATTGCCTTTTCTGCCGCCACGTTTTACCCCGTACTGC 687 Query 2799 TCGGCCGACAGTGTGATGAAGGCTTCGATATCGCCGAATGTCGC-CAGTTTGAAATCCAG 2857 || |||||| || || || | ||||||| | || | ||| |||| || || | Sbjct 686 TCAATCGACAGGTCAATCAATGCCTGGATATCGACAAACG-CGCGGTGTTTAAAGTCTCG 628 Query 2858 CAACGCCTTGTTCAGAGCCTTCCCCTTGGCAACGATCTCCTGCA-CAAGGCGGTCGCGCT 2916 ||| |||| | ||| | | | || || || || | | ||| || |||||||| Sbjct 627 CAATGCCTCATGCAGCGGCCGGGCGCGCGCCACAATATCTTTAACCAACGC-GTCGCGCT 569 Query 2917 CCAGGTCGATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGT 2976 || || ||||| || | ||| | || |||| || || ||||||||| | || Sbjct 568 CCTTATCAATGGGTTTTACCATGGCGTCGGGTATCAATACGCCTTTGGCGTCCTGCCAGT 509 Query 2977 ACCCGGCGGGAAC 2989 | |||||||| || Sbjct 508 AGCCGGCGGGTAC 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126570035738880