Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq2351 161 1e-34 >seq2351 Length=10305 Score = 161 bits (178), Expect = 1e-34 Identities = 292/425 (69%), Gaps = 4/425 (1%) Strand=Plus/Minus Query 24285 GATGTCGTCAAAGACGATCGACGGATC--TGCCAGGATGTTACGGATGATATGGGTGTAT 24342 ||| || || || || | | |||||| || || || || |||||||||||||| || Sbjct 4762 GATATCATCGAACACCAGTGCCGGATCGTTGACA--ATATTGCGGATGATATGGGTATAG 4705 Query 24343 GAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTG 24402 || || || ||||| || || || ||||| || |||| ||| ||||||| || | Sbjct 4704 GAACGGGAATGGATGGTTTCTGAAAATGCCCAGGTTTCTATCCAGGTTTCCAACTCTGGG 4645 Query 24403 TCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGG 24462 ||| | | ||| | || | ||||||| | || || || | || ||||| || Sbjct 4644 ATGGAGATCAGCGGTAACAATGCGACGTTCGGGCTGCGTCCTTGAATGGAGTCCAGCAGT 4585 Query 24463 ATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAG 24522 | ||||| ||||| |||||||||||||||||||| || || || || || | ||| Sbjct 4584 GTTTGGTATTTCAGATTGCTGATGAAGATGTGCTTTTCATGTTCTGGTAGCGCCTGATAG 4525 Query 24523 TCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTC 24582 ||||| || || || | ||| | || ||||| ||||||||||| || | || || ||| Sbjct 4524 TCGATGCGATCGCGAGACACATCCACCTCTTCTGGACGCCAGAAAAAGGAGAGCTGTTTC 4465 Query 24583 TCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTC 24642 || |||||||||||||| | | | ||| ||||| || || || | ||||| | | Sbjct 4464 TCTATCAGCTTCTCGAATATTTCATATTTTTGCTGATCGTAACGCGCTACGTTAACGGAC 4405 Query 24643 TCGCCGAGGAACATCGGCTGAGTCAGGAAATCGAATTTGTTCTGGTTGAAAGTGCTGTAA 24702 | || | ||||||||| | || |||| ||| ||||| ||| ||| | ||| Sbjct 4404 TGACCAAAGAACATCGGTTCCAGAAGCTGATCGTTTTTATTCTGTGAGAAGGTGGTATAA 4345 Query 24703 GACAT 24707 | ||| Sbjct 4344 GCCAT 4340 Score = 141 bits (156), Expect = 9e-29 Identities = 269/392 (69%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 23775 CAGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACC 23834 ||| || |||||| |||| || | ||||||||| || | ||| | || || | Sbjct 5305 CAGCCCTACCGCTTGCATGCGGATATTGGTGATGTATTCAACGTACTGGCAGAGAATGTC 5246 Query 23835 TTTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTG 23894 |||||||||||| |||||||||||||| ||||||| | |||| ||||||||||| Sbjct 5245 TTTGTTCAGGCCAATCATCGAACCGTCGCGGAACAGGTATTCCGCCCACTCTTTCTCCTG 5186 Query 23895 CACCGATGCGTCGATAAAGCCCTGTCGTGCC--TCTTCGTAGCAATCTTCTGCCACACGT 23952 | | || | ||| | ||||| | || | | ||| |||| || | || Sbjct 5185 CTGTGCAGCCAGCACAAA--CAGGTCGTAGCATTCCTGTTGGCACGCTTCGGCGATTTGT 5128 Query 23953 GCAAA--CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGG 24010 || | | || | | || | ||| |||| |||||||||| ||| || |||| Sbjct 5127 GCCATTTCCGG--ATCGTCCTGGCCGGAACGCATCAGATTCAGCATATGCTGGGTACCGG 5070 Query 24011 ACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTA 24070 || |||| |||||||| || || ||||||| ||||| |||| ||| ||| ||| | Sbjct 5069 TCAGGTGCAGCGCTTCATCGCGGGCGATCAGTTTGATAATTTTGGCGTTGCCCTCCATCA 5010 Query 24071 CGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCA 24130 |||| || | || ||||| ||||||||||| || || || |||||||| ||||||| Sbjct 5009 GTTCGCGTTCGGCAAAGGCGAATGAGCAGGCGAAACTGACATAAAAACGGATGGCTTCCA 4950 Query 24131 GTGCATTGATGTTGTGCAGACACAGATACAGC 24162 | || |||| | | ||| |||||||| ||| Sbjct 4949 GCGCGTTGACGCTCATCAGGCACAGATAAAGC 4918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 299/450 (66%), Gaps = 35/450 (8%) Strand=Plus/Minus Query 25900 GGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGC-CTGTTC 25958 || || || ||||| || ||||||| ||||||||||||||| ||| || || || || Sbjct 3310 GGGTGGGTTGGCAGCGCAATTTCCAGGCACAGGTTGGACTGACGCACTGGTGCGATGGTC 3251 Query 25959 GGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT 26018 || || |||||||| | |||||||| || || || ||||| | ||| |||||||| || Sbjct 3250 -GGTTCAAACGGGCTGTGGGTGTTGCAATGATCGACATGCTGAATGTAGATACGGCCGGT 3192 Query 26019 CTGAGAACGCTCCTGACCAAACACGGAGAAGGCATCTGCCGCCGAGATGGTTTTCTTCGC 26078 | || || || | || ||||| ||| |||| |||| |||||| || Sbjct 3191 AGAGGCGCGTTCTTGCATCATCAGCGAGAACAGATCGACCGCTTTCATGGATTTCTT-GC 3133 Query 26079 CACAGAAGGAT-CTG-CCTCCAGTTC------CTCATA-AAGCTGTTGGAATTTCTCTTG 26129 |||| ||| | || ||| || ||| |||| ||| ||| | || || Sbjct 3132 -------GGATGCTGTCGTCTTTTTCATACTGCTGATATAAGC-GTTCGAACTCATCCTG 3081 Query 26130 GTTAGAGAAGAAATAC-TCATACAGCTTACCTTTTGCCACGTTA---GGATGGAACAATG 26185 | | ||| |||| | |||||||| || | |||| | || ||||| | Sbjct 3080 ATCGGCGAA-AAATGCGTCATACAG---GCC---GGGTACGTCAGAGGGGCTGAACAGGG 3028 Query 26186 TGATGTTCTTACCCTGCTG--GAGGCGAGAGTACAGCATTTTGTTCAACTGAAGCCCGTA 26243 |||| ||||| ||| || ||||| |||| || ||||||||||| | ||||| Sbjct 3027 TGAT-TTCTTGTCCT-TTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCACGCCGTA 2970 Query 26244 GTCCACATGGCGAGCACGAGTGCTCTCAGTACCACGGTTGTTCTTCAGCACAATCAGGCT 26303 || | || || | || ||| || |||||||||||||||||||| | |||||| Sbjct 2969 ATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCT 2910 Query 26304 TTCAAAATCCCAGTGCCACATCGGATAAAA 26333 ||| | ||| ||||||| ||| ||||| Sbjct 2909 TTCCACTTCCAGATGCCACAGCGGGTAAAA 2880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478990640885760