Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq2351 217 2e-51 seq3176 163 3e-35 seq3532 150 2e-31 >seq2351 Length=10305 Score = 217 bits (240), Expect = 2e-51 Identities = 334/474 (70%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 128633 CATCAGGTTATTAATCTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACC 128692 |||||| || || | ||| || || ||||| | ||||| | ||||| | || || || Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 128693 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 128752 ||||||||| || || || ||| |||| ||||||| ||||| | || || ||| Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 128753 TGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 128812 || ||||| || || || || ||||| || ||||||||||| ||||| || ||||| || Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 128813 CTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTC 128872 || ||||||||||| |||||||| ||||||| | ||| ||| Sbjct 2816 TTTATAGAAAGGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAG 2757 Query 128873 TGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAAT 128932 |||||||| ||| || ||||| || ||||| ||||||| | |||||| || Sbjct 2756 CGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGAT 2697 Query 128933 TGACGCAGCAGCT-TCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATG 128991 | | | | || | ||||||| |||| || || || |||| ||||| | |||||| | Sbjct 2696 AG-CACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGG 2638 Query 128992 AACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCT 129051 | || |||||||| || || ||||| || || ||||| || || |||||||||||||||| Sbjct 2637 AGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCT 2578 Query 129052 TTTTAGTAGAAACTGCATCATAGAAACGAATAACGTTTGCCAAACGATTTTCGC 129105 | ||||||| || |||||||| || | |||| ||| ||| |||||| Sbjct 2577 TGAAGGTAGAAATCGCGTCATAGAAGCGTTTGACGTAATCCAGACGCGTTTCGC 2524 >seq3176 Length=18404 Score = 163 bits (180), Expect = 3e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48799 GACATTATAGTGCCTCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCA 48858 || |||| | || || ||||||||||| | |||||||| |||||||||| |||| Sbjct 6311 GAAATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCA 6370 Query 48859 GGGAGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCG 48918 | ||||||||||| || || || || |||||||| ||||||| ||||||||||||||||| Sbjct 6371 GCGAGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCG 6430 Query 48919 GATGCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGAC 48978 | || || | || |||| ||| ||||||| || |||||| ||||||||||| |||| Sbjct 6431 GGTGTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGAC 6490 Query 48979 CGCCTTCAAT 48988 | ||||| || Sbjct 6491 CACCTTCGAT 6500 >seq3532 Length=11862 Score = 150 bits (166), Expect = 2e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || ||||||||||| | || ||||| || |||||||| | |||| |||||||| || Sbjct 11160 TCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACGC 11219 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 || || || || |||||||| ||||||| |||||| ||||||||||| || | ||||| Sbjct 11220 ACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGCA 11279 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 48985 || ||| |||||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 11280 TCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTC 11332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532047209149440