Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq3176 116 4e-21 seq2884 113 5e-20 seq2373 107 2e-18 >seq3176 Length=18404 Score = 116 bits (128), Expect = 4e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 55540 AGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGAC 55599 ||| || || | | ||||||| |||| | ||||||| ||||| || || || | || Sbjct 6327 AGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCGCAC 6386 Query 55600 GGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATC 55659 |||||| |||||||| || || || || || ||||||||||| || ||||| | ||||| Sbjct 6387 GGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGCATC 6446 Query 55660 TAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGATTCT 55716 |||| |||||| || | || || || ||||| ||||| ||||||||||| || Sbjct 6447 CAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGATGCT 6503 >seq2884 Length=4543 Score = 113 bits (124), Expect = 5e-20 Identities = 203/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 129154 TTTTTGAATCCAACAGCCATAGGTAATCCTGAAGCAATTTCACGATGGGTCTGTGATTCT 129213 || ||||| || || | ||| | | || ||||| ||||| || || || |||||||| Sbjct 2943 TTCTTGAAACCCACTGGCATCGAAAGGCCAGAAGCCATTTCGCGGTGCGTTTGTGATTCA 3002 Query 129214 GTAGTACGAGCACCAATAGCGACCCAACTAAAAATACCTGATAGATACTTAATAGTAAAT 129273 || || || |||||||| || |||||| || | | | ||||| | | | Sbjct 3003 GTGGTCCGCGCACCAATCGCTGACCAACTGAACAGATCGCCCAGATATTGTGGACTGTTG 3062 Query 129274 GGGTCCAAGACCTCTGTCGCCAAAGGAAGTCCAAGATTCAATAGTTCTAAACAG-AGATG 129332 || ||||| | |||||||||||||| || || | |||| || | || ||| || | Sbjct 3063 GGATCCAACGCTTCTGTCGCCAAAGGCAGCCCCATGTTCACCAGGTTTAG-CAGCAGCTC 3121 Query 129333 GCGGGCAATTCTTAACCCTTCATCAATATTAAAAGAACCATTTAATTCTGGGTCGTTGAC 129392 || ||||| |||||| | || | | || || |||| | | ||||| |||| Sbjct 3122 ACGTGCAATGTGTAACCCCGCCTCCACGTCGAAGGAGCCATCCATGTAGGGGTCATTGAT 3181 Query 129393 TAGGCCTTTCCAACCTACAGTTGTGCGTGGTTTTTCAAAATAAACCCGCATAAC 129446 || ||||||||||||||||| || || ||||||||||| ||||| ||||| || Sbjct 3182 AAGACCTTTCCAACCTACAGTAGTACGCGGTTTTTCAAAGTAAACGCGCATTAC 3235 >seq2373 Length=3101 Score = 107 bits (118), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 64857 AAATGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTA 64916 ||||||||| | ||| ||||||||||||| ||||||| ||||||||||| | |||||||| Sbjct 1577 AAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTA 1518 Query 64917 TCCAACTGAGCTAAGTGTGCAT 64938 ||||||||||||||| | |||| Sbjct 1517 TCCAACTGAGCTAAGGGCGCAT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518211095454720