Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028766.1 Length=33755 Score E Sequences producing significant alignments: (Bits) Value seq3688 145 2e-30 seq2987 143 6e-30 seq3855 96.9 7e-16 >seq3688 Length=22785 Score = 145 bits (160), Expect = 2e-30 Identities = 410/630 (65%), Gaps = 0/630 (0%) Strand=Plus/Plus Query 13031 GAAATGGATAAAGGAGCGTTAGTCTCTTGGTTAGCTCGCCCTATCCTCTACTTGATGAAA 13090 || ||||| |||| ||| |||||| |||| || || || | || | ||||| | Sbjct 7102 GAGATGGAGGAAGGCGCGGAAGTCTCCTGGTCCGCACGGCCGCTGCTGACCCTGATGCAT 7161 Query 13091 ATCCGTGCTAGTGATGGGCACTCAGCATTTGACTCCGAGTATCAAAATGACCCTGTCTCG 13150 ||||| || |||| || ||| | | ||||| ||||||| || |||| ||| ||| Sbjct 7162 ATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTCAGC 7221 Query 13151 GGTGATGATGCGATTTTTGCCAACAGTATCCAGTATTGGACGGAACTGCCTGATGACCTG 13210 ||||| |||||| | |||||| || | | || | ||| | | || | | || | Sbjct 7222 GGTGAAGATGCGCTGTTTGCCCACTGCCTGCATTTCTGGGTCAACCGGCTTAACGAGTGG 7281 Query 13211 ATTTATTTCGGGGCGTTAGACCCCTCAATGGGGAAAGCTGGGGCAAGCCGTGACCCATCT 13270 ||| | |||||| | |||||| | || || || ||||| ||||||||||| || Sbjct 7282 CTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTCA 7341 Query 13271 GCAATTTTGGTCGGTGGCTATCATCGTGAGAGTGGCAAGCTCTATGTTGTTGAGGCACAA 13330 || | |||||||||||| | |||| | | ||| ||| |||| || || || || Sbjct 7342 GCGCTGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCGCAG 7401 Query 13331 ATCAAAAAACGATTGCCGGATTTAATTATTGAGGACGTGATTAGACTGCATTCGCAATAT 13390 || || || ||||||| ||||| | | ||| ||||| | |||| Sbjct 7402 ATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAAGGAATAC 7461 Query 13391 AACTGTCACCGCTGGTTTGTGGAGACGGTGCAATTTCAGGAGTTTTTGCAGACGGAACTG 13450 |||||| ||| | ||| ||||||| ||||||||||| ||| || || ||| Sbjct 7462 CACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAGCTG 7521 Query 13451 GTCAAGCGTTCTGCCCAGCGTGGTAAGCCGGTGCCGGCAACGGCAACCAAGCCGAACAGT 13510 | ||||| | || |||| ||| | ||||||||||| ||| | | || | Sbjct 7522 ATTAAGCGCGCGGCACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATCCCCCATGCC 7581 Query 13511 GACAAGATGTTACGGATTGAGAGCTTGCAACCGCATATTGCCAACGGTTTGATTTTGTTG 13570 |||||| |||| || || |||| | |||| || ||||| | ||||| | || || Sbjct 7582 GACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTATCCGTCTG 7641 Query 13571 CACCGCTCGCAATCTACGCTTGAAAGCCAGCTTCGCCATTTTCCGAAAGCCGATCACGAT 13630 ||| | || | || || | ||||| ||||| ||||| ||||| || || Sbjct 7642 CACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCCGACCATGAC 7701 Query 13631 GATGGTCCGGATGCGTTGGAAATGTTATGG 13660 || || ||||| ||| || | ||| | ||| Sbjct 7702 GACGGCCCGGACGCGCTGCATATGCTCTGG 7731 >seq2987 Length=4368 Score = 143 bits (158), Expect = 6e-30 Identities = 231/332 (70%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 2229 TGGATTGGTGACGGTCACTCACTGAAGCTCAAAGTAGCCCACCCGATACACGGTAAGCCG 2288 ||||| | |||||| | || ||||| | ||||| ||||| ||||||||||| ||| Sbjct 2181 TGGATAGCTGACGGCAAGTCGCTGAACATGAAAGTGGCCCATCCGATACACGGGCGGCCC 2240 Query 2289 TTTACCCCTGAGCTGACAATGATTGTCGATGGTGCTGGTAGAAAAGTGGTGGGCTGGTCG 2348 ||||||||||||||||| || | |||| || | | ||||||||||| Sbjct 2241 TTTACCCCTGAGCTGACTTTGGTGCTCGACGGACGCACCCGCTATCTGGTGGGCTGGAGC 2300 Query 2349 CTGGCACTCAGTGAGAACGCCTTTGCGGTGGCTGATGCACTACGCCACGCCATTAGCCTA 2408 ||| |||| || |||||| | ||||| || |||||| || | ||||| | Sbjct 2301 CTGTCACTGGCGGAAAACGCCATCGCGGTAGCGGATGCATGGCGTTATGCCATCCAGCAC 2360 Query 2409 CACGGTGTGCCGGCAATCTACTACTCGGATAACGGTGGTGGTGAAAAGAATAAATTTTTG 2468 ||||| |||| | |||||| |||||||| |||||||| | || || | || Sbjct 2361 CACGGCAAGCCGCTGTTTGCCTACTCCGATAACGGCGGTGGTGAGACCAACAAGATGCTG 2420 Query 2469 GATGCGGAAATCACGGGGATGTTGCCCCGCCTCGGTATCCGACACGAAACAGGGATTGCG 2528 |||||||| ||||| ||||| || ||||| || || || || || || || | Sbjct 2421 GATGCGGATATCACCGGGATTTTTCCCCGGCTGGGCATAGAGCATATTACCGGTATCCCC 2480 Query 2529 GGCAATCCGCAGGGGCGAGGCATTATTGAACG 2560 ||||||||||||| ||| ||||||||||| || Sbjct 2481 GGCAATCCGCAGGCGCGGGGCATTATTGAGCG 2512 >seq3855 Length=27953 Score = 96.9 bits (106), Expect = 7e-16 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 2409 CACGGTGTGCCGGCAATCTACTACTCGGATAACGGTGGTGGTGAAAAGAATAAATTTTTG 2468 |||||| |||| ||||||| ||||||||||| | || |||| || || | | Sbjct 27899 CACGGTAAGCCGTTTCTCTACTATTCGGATAACGGCAGCGGGGAAACCAACAACTCGCTC 27840 Query 2469 GATGCGGAAATCACGGGGATGTTGCCCCGCCTCGGTATCCGACACGAAACAGGGATTGCG 2528 |||||||| | || || || || ||||||| ||| ||| || || ||| | Sbjct 27839 GATGCGGATGTTACCGGTATTTTAACCCGCCTGAATATTGAACATCCGACCGGCATTCCC 27780 Query 2529 GGCAATCCGCAGGGGCGAGGCATTATTGAACGCTTAAATAAAACCATCGGTATGACGATT 2588 ||||||||||| ||||| |||||||||||||| | || ||| | ||| ||| Sbjct 27779 GGCAATCCGCAAGGGCGCGGCATTATTGAACGGCTTAACCGCACCTTGCCGATGCGCATT 27720 Query 2589 GCCCGACAGTTTGAAACCGGCTATGCAACCGGTGCAGATCCGGAAACCGTTCGCAA 2644 ||||| || |||| ||| ||| | ||||| || || ||||||||| ||||| Sbjct 27719 GCCCGCCATTTTGCCACCTACTACGGCACCGGCGCTGACAGGGAAACCGTGCGCAA 27664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107889316015872