Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq2351 217 2e-51 seq3532 147 3e-30 seq3176 107 2e-18 >seq2351 Length=10305 Score = 217 bits (240), Expect = 2e-51 Identities = 299/415 (72%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 18307 TTGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTC---TCAAGCTGT 18363 |||||||| || || ||| | ||||| || ||||||||||| |||||| || || || Sbjct 2586 TTGCCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGC-GT 2644 Query 18364 GTTAAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTA 18423 ||| |||||| ||| |||||||| || || ||||||| | || || |||| Sbjct 2645 GTT--GATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCCACCTCCAGTGCTATCGTG 2702 Query 18424 AATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGA 18483 || || || | || || |||||||| |||||||| ||||| ||||||||| || Sbjct 2703 AAATACGTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGT 2762 Query 18484 AGTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTC 18543 || | ||||| |||||||| || ||||| |||||| |||| ||||||||| Sbjct 2763 AGCCCGATTCGCGGTGGTGAAGCATTCCATACTGGCTGTATTCCTTTCTATAAACATTTC 2822 Query 18544 CAGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTAT 18603 ||||| || || ||||| || ||||| |||||||| || || || |||||||| ||| | Sbjct 2823 CAGACCGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTT 2882 Query 18604 TATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTT 18663 || || |||||||||| ||| | |||| ||| | || ||||| || ||| || || Sbjct 2883 TACCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTG 2942 Query 18664 GATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGT 18718 || | |||||| | ||||| || ||||| || | || | || || ||||||| Sbjct 2943 GAAGGCAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTTGAACAAGCTGATGT 2997 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 20067 GCGCGTTACGATACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGT 20126 |||||||||||| || ||| ||||||| ||||| || | || || || ||| | Sbjct 4418 GCGCGTTACGATCAGCAAAAATATGAAATATTCGAGAAGCTGATAGAGAAACAGCTCTCC 4477 Query 20127 TTCTTCTGGCGTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTA 20186 || ||||||||||| |||||||| || || |||| ||| ||||| ||| | || Sbjct 4478 TTTTTCTGGCGTCCAGAAGAGGTGGATGTGTCTCGCGATCGCATCGACTATCAGGCGCTA 4537 Query 20187 CCAGAACATGAAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACC 20246 |||||||||||||| || ||||| | |||| |||| || || | | || || || Sbjct 4538 CCAGAACATGAAAAGCACATCTTCATCAGCAATCTGAAATACCAAACACTGCTGGACTCC 4597 Query 20247 GTTCAGGGACG 20257 |||| ||||| Sbjct 4598 ATTCAAGGACG 4608 >seq3532 Length=11862 Score = 147 bits (162), Expect = 3e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 125471 CCGGAAGTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACG 125530 |||||||| ||| | ||||| || || || || || || || |||||| ||||||||| Sbjct 11347 CCGGAAGTGCGCGTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACG 11288 Query 125531 CTTCAAGATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGT 125590 || ||||||| |||||||| || |||||||| || || ||||||| |||||||||||| Sbjct 11287 CTGGAAGATGCGGTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGT 11228 Query 125591 TATGCAGTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACG 125650 |||||||| ||||| || ||||||| | |||||||| ||||| || | || || Sbjct 11227 TATGCAGTGCGTTTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACT 11168 Query 125651 TTTACGGAA 125659 || || ||| Sbjct 11167 TTCACTGAA 11159 >seq3176 Length=18404 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 125481 GCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATG 125540 |||| ||||| ||||| || || || || || || |||| ||||||| ||| |||| Sbjct 6502 GCATCGAAGGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATG 6443 Query 125541 CAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTC 125600 | | |||| || ||||||||||| || ||||||| ||||||||||||||||| || | Sbjct 6442 CCATGGAACACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGC 6383 Query 125601 GTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACGGAAG 125660 | || || | |||| ||||||||| |||||||| | || || || || | Sbjct 6382 GCTTCAACTCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAGT 6323 Query 125661 CTATGTAAT 125669 | ||||||| Sbjct 6322 CAATGTAAT 6314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582707096294400