Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27]
3,968 sequences; 388,752,668 total letters
Query= NC_028773.1
Length=182145
Score E
Sequences producing significant alignments: (Bits) Value
seq2351 217 2e-51
seq3532 147 3e-30
seq3176 107 2e-18
>seq2351
Length=10305
Score = 217 bits (240), Expect = 2e-51
Identities = 299/415 (72%), Gaps = 6/415 (1%)
Strand=Plus/Plus
Query 18307 TTGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTC---TCAAGCTGT 18363
|||||||| || || ||| | ||||| || ||||||||||| |||||| || || ||
Sbjct 2586 TTGCCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGC-GT 2644
Query 18364 GTTAAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTA 18423
||| |||||| ||| |||||||| || || ||||||| | || || ||||
Sbjct 2645 GTT--GATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCCACCTCCAGTGCTATCGTG 2702
Query 18424 AATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGA 18483
|| || || | || || |||||||| |||||||| ||||| ||||||||| ||
Sbjct 2703 AAATACGTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGT 2762
Query 18484 AGTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTC 18543
|| | ||||| |||||||| || ||||| |||||| |||| |||||||||
Sbjct 2763 AGCCCGATTCGCGGTGGTGAAGCATTCCATACTGGCTGTATTCCTTTCTATAAACATTTC 2822
Query 18544 CAGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTAT 18603
||||| || || ||||| || ||||| |||||||| || || || |||||||| ||| |
Sbjct 2823 CAGACCGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTT 2882
Query 18604 TATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTT 18663
|| || |||||||||| ||| | |||| ||| | || ||||| || ||| || ||
Sbjct 2883 TACCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTG 2942
Query 18664 GATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGT 18718
|| | |||||| | ||||| || ||||| || | || | || || |||||||
Sbjct 2943 GAAGGCAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTTGAACAAGCTGATGT 2997
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 20067 GCGCGTTACGATACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGT 20126
|||||||||||| || ||| ||||||| ||||| || | || || || ||| |
Sbjct 4418 GCGCGTTACGATCAGCAAAAATATGAAATATTCGAGAAGCTGATAGAGAAACAGCTCTCC 4477
Query 20127 TTCTTCTGGCGTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTA 20186
|| ||||||||||| |||||||| || || |||| ||| ||||| ||| | ||
Sbjct 4478 TTTTTCTGGCGTCCAGAAGAGGTGGATGTGTCTCGCGATCGCATCGACTATCAGGCGCTA 4537
Query 20187 CCAGAACATGAAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACC 20246
|||||||||||||| || ||||| | |||| |||| || || | | || || ||
Sbjct 4538 CCAGAACATGAAAAGCACATCTTCATCAGCAATCTGAAATACCAAACACTGCTGGACTCC 4597
Query 20247 GTTCAGGGACG 20257
|||| |||||
Sbjct 4598 ATTCAAGGACG 4608
>seq3532
Length=11862
Score = 147 bits (162), Expect = 3e-30
Identities = 146/189 (77%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 125471 CCGGAAGTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACG 125530
|||||||| ||| | ||||| || || || || || || || |||||| |||||||||
Sbjct 11347 CCGGAAGTGCGCGTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACG 11288
Query 125531 CTTCAAGATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGT 125590
|| ||||||| |||||||| || |||||||| || || ||||||| ||||||||||||
Sbjct 11287 CTGGAAGATGCGGTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGT 11228
Query 125591 TATGCAGTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACG 125650
|||||||| ||||| || ||||||| | |||||||| ||||| || | || ||
Sbjct 11227 TATGCAGTGCGTTTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACT 11168
Query 125651 TTTACGGAA 125659
|| || |||
Sbjct 11167 TTCACTGAA 11159
>seq3176
Length=18404
Score = 107 bits (118), Expect = 2e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 125481 GCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATG 125540
|||| ||||| ||||| || || || || || || |||| ||||||| ||| ||||
Sbjct 6502 GCATCGAAGGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATG 6443
Query 125541 CAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTC 125600
| | |||| || ||||||||||| || ||||||| ||||||||||||||||| || |
Sbjct 6442 CCATGGAACACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGC 6383
Query 125601 GTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACGGAAG 125660
| || || | |||| ||||||||| |||||||| | || || || || |
Sbjct 6382 GCTTCAACTCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCACTCAGT 6323
Query 125661 CTATGTAAT 125669
| |||||||
Sbjct 6322 CAATGTAAT 6314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582707096294400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |