Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq3532 188 8e-43 seq3176 154 2e-32 seq2351 134 1e-26 >seq3532 Length=11862 Score = 188 bits (208), Expect = 8e-43 Identities = 152/184 (83%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 ||||| || |||||||||||||| |||||| |||| |||||||| ||||||||||| || Sbjct 11332 GAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTA 11273 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 || || ||||||||||| |||||| ||||||||||||| || ||||||||||| || || Sbjct 11272 AAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTC 11213 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098 ||||| |||| || |||||||| || ||||| || | ||||| ||||| || || || Sbjct 11212 AACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGCCTG 11153 Query 102099 TAAT 102102 |||| Sbjct 11152 TAAT 11149 >seq3176 Length=18404 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 || ||||||||||||||||||||||| ||||| || ||||||| ||| ||||| Sbjct 6500 ATCGAAGGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCC 6441 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | || |||||||||||||||||| ||||||||||||| || |||||||| || ||| Sbjct 6440 ATGGAACACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGC 6381 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 102088 || ||||| ||||| |||||||||| |||||||| | ||||| ||||| Sbjct 6380 TTCAACTCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCAC 6328 >seq2351 Length=10305 Score = 134 bits (148), Expect = 1e-26 Identities = 292/437 (67%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823 || || ||||| || | ||||| |||||||||||||||| || || ||| | || Sbjct 2550 CGCTTCTATGACGCGATTTCTACCTTCAAGATTTCATTGCCAACGCCGATCATGTCCGGC 2609 Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTGATTCATTA 22883 ||||| || || || ||||| || || ||||| | |||||| || || | Sbjct 2610 GTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCTG 2669 Query 22884 AAGTCTATCAATAAGGCTTCCGCTTCAATTGTTGAATATATCTCTAAACGCGCTGGAATT 22943 | || || || | ||| | | || || |||| | || | || || || || Sbjct 2670 GATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTATC 2729 Query 22944 GGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACGC 23003 || ||||||| ||| |||||||| ||| |||| || ||||||| | | Sbjct 2730 GGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGTGGTGAAGCATTC 2789 Query 23004 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGTTCACAG 23063 |||||||| ||||||||| | |||||||| ||||| || || ||||| || |||||| Sbjct 2790 CATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGCTCACAG 2849 Query 23064 GGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 23123 ||||| | || || || || || || | ||| || | |||||| ||||||| ||| Sbjct 2850 GGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAAGTGGAA 2909 Query 23124 AATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCATATGGAT 23183 | || || || |||| || ||| || || |||| |||||| | ||||| | ||| Sbjct 2910 AGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCACCTCGAT 2969 Query 23184 TATGGTGTTCAACTGAA 23200 || || || || |||| Sbjct 2970 TACGGCGTGCAGTTGAA 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534642280427520