Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq3827 82.4 3e-11 >seq3827 Length=1665 Score = 82.4 bits (90), Expect = 3e-11 Identities = 123/171 (72%), Gaps = 9/171 (5%) Strand=Plus/Plus Query 46018 CTCGTCGTGCACCGACAGGATGACGTCGTAGATGCCCTCGTCGTGGCAGCGGAGCAT--- 46074 |||||| ||||||| ||| |||| ||||||| || || || || ||| |||| Sbjct 1372 CTCGTCATGCACCGTCAGTATGATGTCGTAGCCGCTATCCTCCA--CACCGG-GCATATT 1428 Query 46075 CGCGTCCGCCATCAGGTCGCGGGCCGTGGCCTGGGTGATGTTCTCGACGAGCATGCCGCC 46134 |||| ||||||| || ||||| || |||||||| | |||||| | ||| ||||||| Sbjct 1429 CGCG---GCCATCACATCACGGGCAGTAGCCTGGGTTACGTTCTCTGCCAGCTTGCCGCC 1485 Query 46135 GTAGGTGTCCTGACGACGCCACTTCTTCGTGTACGGGTCGACGCCCATGTA 46185 |||||| | | | || |||| ||| |||| | || || |||||| || Sbjct 1486 GTAGGTTTGCAGGCGTTGCCATTTCCGGCTGTAGGTGTTGATGCCCATATA 1536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187507964208384