Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq2351 161 1e-34 seq3764 87.8 2e-12 >seq2351 Length=10305 Score = 161 bits (178), Expect = 1e-34 Identities = 324/471 (69%), Gaps = 16/471 (3%) Strand=Plus/Minus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 |||||||||| ||||| | | ||| | ||| || | | ||| || | ||| | Sbjct 3040 GGGCTGAACAGGGTGATTTCTTGTCCTTTGACCAGGCGCTGATACATCAGCTTGTTCAAC 2981 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || || ||||| ||||| || | ||||| | || || || ||||||||||| Sbjct 2980 TGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGC 2921 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || |||||| |||| ||||| |||||||| | ||| || |||| || || || || ||| Sbjct 2920 ACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCTCCGCCG 2861 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 || | ||||| || || || ||||| || | | || || || ||| |||| ||| Sbjct 2860 CGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG---TTTATAGAAAGGA 2804 Query 140359 ATAACGCCTGTATGACGAA--CTTCACCAGCGCCAATCTTAGAACCTTCAGCACG-ATAC 140415 ||| ||| ||||| ||| |||||||| ||| |||| ||| ||||| |||| Sbjct 2803 ATACAGCCAGTATG--GAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATAC 2746 Query 140416 ATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGT 140473 || ||||||| || ||||||||||| | ||| | ||||| | ||| || || Sbjct 2745 -GACCGGCGTTAATGCCGATACCGGCACGCT--GTGAAACGTATTTCACGATAGCACTGG 2689 Query 140474 TTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACT 140533 || ||||| || || || ||||||| ||||| | ||||| || ||||||| Sbjct 2688 AGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACT 2629 Query 140534 GGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT 140584 | || || || ||||| || |||| ||| || || || |||| ||||||| Sbjct 2628 GACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCT 2578 >seq3764 Length=2321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 67175 ATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTA 67234 || ||||||||| | ||| ||||||||| |||||| ||||||||||||| |||||||| Sbjct 2120 ATATGGTGGCCCCTGTTGGGTTTGAACCAACGACCAAGCGATTATGAGTCGCCTGCTCTA 2179 Query 67235 TCCATCTGAGCTAAAGGGCC 67254 ||| ||||||||| ||||| Sbjct 2180 ACCA-CTGAGCTAAGGGGCC 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518569477678080