Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq2333 172 9e-38 seq2351 125 1e-23 >seq2333 Length=8475 Score = 172 bits (190), Expect = 9e-38 Identities = 732/1143 (64%), Gaps = 24/1143 (2%) Strand=Plus/Plus Query 125187 CACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCATAATCCCAT 125246 |||| ||| ||||| ||||| || ||| | || | || | ||| |||||||| Sbjct 4038 CACTCATCGATCGGCGTATTGGTGCCGTAATAGGGCACACGGCTATAACTGTAATCCCAG 4097 Query 125247 ACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAACAGATGAAA 125306 ||| || || |||| | ||| | | ||| ||||| |||| | || || ||||| Sbjct 4098 ACGTCTTCCAGCGCTTTAAGGTTATGTTGCAGGTTCGGATACTCGCCGTAGCAAATGAAG 4157 Query 125307 CCACCGTTTGCATGAATTGGGTATG-CAGCTTCAAAATCAATTTTCTCAAATGGGTTCAC 125365 || |||||||| | |||||| | ||| |||||| || ||||||| | || ||||| Sbjct 4158 CCTCCGTTTGCCAGCGGTGGGTAGGGCAG-TTCAAAGTCGATTTTCTGGTAAGGATTCAC 4216 Query 125366 TTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTGATACCTGT 125425 ||||| |||||| ||||| || ||| ||||| || |||| || | | |||| Sbjct 4217 CTTCTTCTCCACGTCCAAGTGGAAGCTGTTGGTGTAGTAACCTTTATCGGTCACGCCTGG 4276 Query 125426 AATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGATTCACTTGG 125485 | || ||| ||| | ||||| ||| || ||||| ||||| || |||||| || Sbjct 4277 TACCACGCCGAATTCAGCGGTGTCGATACGGCAAAAACGGTCACACAGGTTTTCACTCGG 4336 Query 125486 TGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCATGCATCGGTGTACGCTCT 125545 |||||||| || |||||||||||||| || ||||||||| |||||| ||| | Sbjct 4337 CGTACTGTAAAGGCTGAAACCGTAGCCGGTTTCTTCTTTCCACTGATCGGTCGCGGCTTT 4396 Query 125546 AAGAGTTTCCACAATCTTTTCAGCGAGGAATTGTTTGTGTTGTGACTCA--AACGTATGC 125603 || | | || || |||| | || | || |||| | || | | Sbjct 4397 CAGGCGTGCGACGAT------GGCGACCGCCTTTTCACGCAGTTGCTCATTATCGAACAC 4450 Query 125604 ATGTCTTTATCTGGCGAA-AGCAACGTTACTGCT-TCGTGTAACCCGATATAACCAAGCG 125661 ||| | | || | || ||| ||||| || | || || | ||| ||||| || | | Sbjct 4451 GTGTGTCTGGTTGCCAAACAGC-GCGTTAATGGTCTCATGAACCCCAATATAGCCCAATG 4509 Query 125662 AGATACTTGAACGACCGTGTTTGAAAACTTCACTGACTTTATCAGTTGGC-TTCAAGCGT 125720 |||| || ||||||| |||||| | ||| || || || || || |||| |||| Sbjct 4510 AGATCGATGCCCGACCGTTTTTGAAGATCTCAGCAACGTTGTC-GTCCGCTTTCAGGCGT 4568 Query 125721 ACGCCCATTGCACCTTCACAGTATAGAATTGGAGCAACTGATGCAGTTACATCATCAAAA 125780 || || || ||||| || || |||||||| || || | || | || ||| Sbjct 4569 ACACCACAGGCGCCTTCCATATACAGGATTGGAGCGACACGGGCTTTGACGTTTTCCAAA 4628 Query 125781 CGCTTAATACGCAACATCAATGCTTCGTAAGCTAGTTTACAACGCTCGTGTAAGATCTCG 125840 |||| || ||| |||||| |||| | || |||| ||| | | || | | Sbjct 4629 CGCTCGATGCGCGTCATCAACGCTTTTTTCGCCAGTTGCAGACGATTATCCAACAGGTTC 4688 Query 125841 AAGAAGCG---TTCAGTATCACCCGATGCTTCAATAGCAATACGCGGGATATTGATTGAG 125897 |||| || ||| ||| | |||||| | || || ||||| | |||| | Sbjct 4689 CAGAAACGCTCTTCGTTATGTTC---TGCTTCCAGCGCGATGCGCGGCAGGTTGAGGCTG 4745 Query 125898 ACGACGCCTAAGTTATTACGACCATCGAATACCGTTTCACCATCTTCGTTCTTCCAGTCA 125957 | || || | ||| || ||||||||| | | | || ||||| || | || | Sbjct 4746 ATTACCCCGAGGTTGTTGCGACCATCGTGGATCTGCTTGCCCTCTTC-CTCATACA--CG 4802 Query 125958 CCCAAGAATGAGCGACAGCCCATTGGAGACTTAAACCCACCAGTCGTTTCAACTAGTTTG 126017 || | ||| ||| |||||||| || | ||||||| || || | ||| | | Sbjct 4803 CCAAGGAAACTGCGGCAGCCCATAGGCGTCTTAAACGAGCCGGTAACCTTAACCACCTGA 4862 Query 126018 TCATAGTTCAAAATGTCTGGGTACATACGCTTACTTGCACATTCAAGAGCTAACTTTTTG 126077 || || || | ||| || |||||||| ||||| || || || || || || | | ||| Sbjct 4863 TCGTAATTGAGAATATCCGGGTACATCCGCTTGCTGGCGCAATCCAGTGCCAGTTGCTTG 4922 Query 126078 ATGCCGTAGCACGGGTCGCCTTCTTTCAGATTCACGCCGTCTCTCAATGTGAAAACAAGC 126137 ||| | ||| ||| ||| | | || |||| || ||||| | | | ||| || || Sbjct 4923 ATGTCATAGTTCGGATCGGCAGCCTTGTGATTGACACCGTCGCGGATAGCGAACACCAGT 4982 Query 126138 TTAGGGAAAATAGCAGTTTTCTTAGTCTTACCTAGACCTGCAATACGATTCTGAAGAATA 126197 || ||||| | || ||||| | || || ||||| ||||| || || | || || Sbjct 4983 TTGGGGAACACCGCGGTTTTACGGTTTTTGCCCAGACCGGCAATGCGGTTGCGCAGGATG 5042 Query 126198 CTTTTTTGAATAAGTTTTTCTTCCCACGACGTACCTAACCCGAAGTTGATTGTCGTGAAT 126257 || ||||| || |||||| || || | ||||| | || || Sbjct 5043 GATTGCTGAATCAGGCGCGATTCCCAACGGGTGCCGAGACCGAAACCAAAGGTGACAAAC 5102 Query 126258 GGTGTCTGACCGTTTGAAGTCTGCATCGTATTGACTTGATATTCAAACGTCTGGAATGCA 126317 ||||||||||| || | || |||| |||||| |||| |||||| | || |||||| || Sbjct 5103 GGTGTCTGACCATTGGCGGTGTGCAGCGTATTTACTTCATATTCCAGCGACTGGAAGGCG 5162 Query 126318 TCG 126320 ||| Sbjct 5163 TCG 5165 >seq2351 Length=10305 Score = 125 bits (138), Expect = 1e-23 Identities = 287/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Minus Query 236265 GTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAG 236324 ||| || || ||||| | ||||| |||| || || |||||||||||| || | ||| Sbjct 2972 GTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAG 2913 Query 236325 TTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACC 236384 |||| ||||| | ||||| | ||||||| | || || || || || || ||||| Sbjct 2912 GCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACACC 2853 Query 236385 ACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACA-CCAG 236443 || || || || ||||| || || || || || ||||| |||| |||| |||| |||| Sbjct 2852 GCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAAGGAA-TACAGCCAG 2794 Query 236444 TGTGACGAAT--CTCACCTGAACGAA-CGACTGCCCCTTCAGCACGAATCGCACCGCCAT 236500 | || |||| ||||| |||| || ||| | |||||||| |||| | | Sbjct 2793 TATG--GAATGCTTCACCACCGCGAATCGGGCTACCCAGC-GCACGAATACGACCGGCGT 2737 Query 236501 TCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGA 236560 | | |||||||| ||||||| || ||| | || || | | | | || | Sbjct 2736 TAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAGGTGGCGTTAA 2677 Query 236561 TTGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTCGGGG 236620 | |||| || |||||| | |||||| || || || || ||||| || || |||| Sbjct 2676 TGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGG 2617 Query 236621 TACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTGT 236680 |||| ||||| | ||| ||||| || || ||||||| ||| || |||| || | | Sbjct 2616 TACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTTGAAGGTAGAAATCGCGTCAT 2557 Query 236681 AGAAG 236685 ||||| Sbjct 2556 AGAAG 2552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793714229821440